PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032702.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 219aa    MW: 24410.7 Da    PI: 9.5197
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032702.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.41.3e-32139197159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r ++d+++v +tYeg Hnh+
  Pbr032702.1 139 LDDGYRWRKYGQKAVKNSSYPRSYYRCTHHTCNVKKQVQRLSKDTSIVMTTYEGIHNHP 197
                  59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-33125197IPR003657WRKY domain
SuperFamilySSF1182901.23E-28131198IPR003657WRKY domain
PROSITE profilePS5081128.931134199IPR003657WRKY domain
SMARTSM007744.2E-38139198IPR003657WRKY domain
PfamPF031068.7E-26140197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEDPHQQYNP PPLTSQSLPL SLPFLSPPPP QNPPPPPPYL FTPSSSSSLM TNPPDLLDID  60
WVSLLSGGTQ AAGGFNHDQI NSFKPMAMMD NNISGSAGNT GADQEEKVGV KRKGGGKMRK  120
PAASRPRFAF QTRSEDDILD DGYRWRKYGQ KAVKNSSYPR SYYRCTHHTC NVKKQVQRLS  180
KDTSIVMTTY EGIHNHPCEK LMETLTPLLK QMQFLSRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-25129196774Probable WRKY transcription factor 4
2lex_A6e-25129196774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00317DAPTransfer from AT2G46130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032702.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341120.11e-163PREDICTED: probable WRKY transcription factor 24
TrEMBLA0A498KPY21e-125A0A498KPY2_MALDO; Uncharacterized protein
STRINGXP_009341120.11e-162(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.14e-57WRKY DNA-binding protein 43