PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032764.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 230aa    MW: 25293.3 Da    PI: 5.3543
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032764.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.6e-1658100147
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 
                  + y+GVr++  +g+Wv+e+r+p   +k++r++lg+f tae+Aa+a++
  Pbr032764.1  58 PVYRGVRRRN-SGKWVCEVREP---NKKTRIWLGTFPTAEMAARAHD 100
                  68*****888.8******9998...347*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-1258100IPR001471AP2/ERF domain
SMARTSM003804.1E-2359125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-2859121IPR001471AP2/ERF domain
PROSITE profilePS5103218.29459119IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-1759121IPR016177DNA-binding domain
PRINTSPR003672.4E-96071IPR001471AP2/ERF domain
CDDcd000185.00E-2760121No hitNo description
PRINTSPR003672.4E-98298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDTFSHYYMD PQPESSSASD ANSARPMFMN LSDEEVLLAS TYPKKQAGRK KFKETRHPVY  60
RGVRRRNSGK WVCEVREPNK KTRIWLGTFP TAEMAARAHD PRPPPTLALR GRSACLNFAD  120
SVWRLPAPAS ANAKDIQTAA AEAAEQFRPV EESDEACGAS AVAPSECTSA SKQQVHFVDE  180
EAVFGMPGLL ANMAEGMLLP PPHYSDDHDV GVYDDVDVYG DVPLWSFSI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032764.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324540.0GU732454.1 Malus x domestica AP2 domain class transcription factor (AP2D30) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341269.11e-133PREDICTED: dehydration-responsive element-binding protein 1A
SwissprotQ9FJ936e-69DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A1Y0DCH91e-125A0A1Y0DCH9_MALDO; C-repeat binding factor-like 2
STRINGXP_009341269.11e-133(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-67C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]