PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032788.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27075.8 Da    PI: 9.3214
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032788.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.34.8e-29959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 +rien+s rqvtfskRr+g+lKKA+ELSvLCdaevaviifs++ k+ye++s
  Pbr032788.1  9 ERIENNSSRQVTFSKRRKGLLKKAYELSVLCDAEVAVIIFSQKAKIYEFAS 59
                 69***********************************************86 PP
2K-box70.16.8e-2480172798
        K-box   7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  ++   e+  ++l++e+a + k+ie L+ +qR+llG+dL+s+ ++eLq++ +qLe+sl++iR+++ +l++eq+e+ + +e+ l +en +Lr++ 
  Pbr032788.1  80 NKvEVEQYVQHLKHESAIMAKKIEILEASQRKLLGNDLDSCPVEELQEISSQLERSLRSIRERRGQLYMEQMEQHKARERFLLQENARLREEC 172
                  333567889*********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.202161IPR002100Transcription factor, MADS-box
SMARTSM004325.6E-38160IPR002100Transcription factor, MADS-box
CDDcd002655.60E-39378No hitNo description
PRINTSPR004042.6E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-32389IPR002100Transcription factor, MADS-box
PfamPF003194.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.7E-2288172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.23688178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVRGKIEMER IENNSSRQVT FSKRRKGLLK KAYELSVLCD AEVAVIIFSQ KAKIYEFASS  60
DMQRTINRYH KHENGSGQTN KVEVEQYVQH LKHESAIMAK KIEILEASQR KLLGNDLDSC  120
PVEELQEISS QLERSLRSIR ERRGQLYMEQ MEQHKARERF LLQENARLRE ECRAKPRMEF  180
SPQEKRASAS VSYEKAGAPA SAPINYWSQS SMSSEVETDL LIGQPIVRAV DRIAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-21185186MEF2 CHIMERA
6bz1_B3e-21185186MEF2 CHIMERA
6bz1_C3e-21185186MEF2 CHIMERA
6bz1_D3e-21185186MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032788.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640060.0KP164006.1 Pyrus pyrifolia clone PpSOC1-1 SOC1 MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341296.11e-173PREDICTED: MADS-box protein AGL42-like isoform X5
TrEMBLA0A0D4ZY401e-170A0A0D4ZY40_PYRPY; SOC1 MADS-box protein
STRINGXP_009341296.11e-172(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.31e-57AGAMOUS-like 42