PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032878.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 240aa    MW: 25629.7 Da    PI: 6.2474
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032878.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.6e-1792142255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr+++ +g+++AeIrdp +ng  +r+++g++ ta +A  a+++a+ k++g
  Pbr032878.1  92 HFRGVRRRP-WGKYAAEIRDPMKNG--ARVWIGTYETAADAGLAYDRAAFKMRG 142
                  69*******.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.34E-2891152No hitNo description
PfamPF008472.8E-1292142IPR001471AP2/ERF domain
SMARTSM003803.2E-3392156IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-2192151IPR016177DNA-binding domain
PROSITE profilePS5103222.392150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2992151IPR001471AP2/ERF domain
PRINTSPR003674.1E-1393104IPR001471AP2/ERF domain
PRINTSPR003674.1E-13132152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSTETSSCSN RALLESIRQY LLDDDFETQV TFLVNVAEDS QSSCRGTSNP SNSIPFDVEG  60
LGATMGVNHD LETSNILEGA AHEQHAPQKG QHFRGVRRRP WGKYAAEIRD PMKNGARVWI  120
GTYETAADAG LAYDRAAFKM RGSKAKLNFP HLIGTHGLEP GRVAPKCGLS EPSSSPASSS  180
DDGGSPMLKL RRSGVGLAAK APKLKEAAEQ FQVFQLDTSA LAAPGSQILV EELNDLSAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-3289150263ATERF1
3gcc_A5e-3289150263ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032878.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341338.11e-179PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLA0A314UW562e-97A0A314UW56_PRUYE; Ethylene-responsive transcription factor 13-like
STRINGXP_009341338.11e-178(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-34ethylene-responsive element binding factor 13