PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr033039.2

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 229aa MW: 25502.9 Da PI: 9.5849

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr033039.2	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.1	4.6e-18	33	120	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +Li+a++e++ +lrrg+lk +Weev+ + + + ++s++q ++k+e+l++r++++k++ ++rt +s +p+f+ +e Pbr033039.2 33 WTQEETVQLIRAYQEKWYALRRGQLKSSQWEEVAVTVaarcgyEYGEPSKSATQSRHKMEKLRQRHRAVKKRLGQRT---KSGWPFFELME 120 *********************************998777766666689********************984...457***998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.2E-17	32	122	No hit	No description
SMART	SM00595	0.0021	40	127	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MSTPLPPSPT ASPMASVSAS PTATAKKPQP LPWTQEETVQ LIRAYQEKWY ALRRGQLKSS 60 QWEEVAVTVA ARCGYEYGEP SKSATQSRHK MEKLRQRHRA VKKRLGQRTK SGWPFFELME 120 QMERGPMPIS VMPMAEMPHQ QEEEELDYHD RNYHGGGGGG NEDDDEENSN KVRSIDFILR 180 RPTFVNRFSG KASFLQGPAA AAEVKRGGEA VGEXXXXXXX RRGGPAAA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr033039.2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009372525.1	1e-158	PREDICTED: uncharacterized protein LOC103961670
TrEMBL	A0A498JQL0	1e-112	A0A498JQL0_MALDO; Uncharacterized protein
STRING	XP_009372525.1	1e-157	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10087	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	4e-34	Trihelix family protein