 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pbr033179.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
| Family | C2H2 | ||||||||
| Protein Properties | Length: 210aa MW: 23200.3 Da PI: 8.6516 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 13.2 | 0.00026 | 32 | 52 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C C+++F + L +Hi +H
Pbr033179.1 32 CRLCDRVFMSTQALISHIDSH 52
******************998 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50157 | 9.93 | 30 | 57 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 32 | 52 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 210 aa Download sequence Send to blast |
MSRYNWNLRQ GNMLGSSDPA PPRATDLTQI ACRLCDRVFM STQALISHID SHMGDGDRTT 60 ARLRQLNNLP NNINAFISSN APTRPAPIFP LTNPFHQRSL FHGANNQIGF ATPPLPPPQP 120 HYQLPCAQQP QVPHYSLPRN PNVISAAAAS HHMMMPYGNQ MAHVVREENY SDCTRPFLSQ 180 LERLIPSINF GLDASGNAKS DNLDLALKL* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Pbr033179.1 |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_021804636.1 | 1e-39 | uncharacterized protein LOC110748960 | ||||
| TrEMBL | A0A498HNU3 | 1e-138 | A0A498HNU3_MALDO; Uncharacterized protein | ||||
| STRING | EMJ25623 | 4e-43 | (Prunus persica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF14890 | 8 | 12 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|