PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr033383.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 231aa    MW: 26256.4 Da    PI: 6.0984
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr033383.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.86e-092065346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT  Ed+ + +a  ++  +   +W++Ia +++ g+t+k++ +++ +
      Pbr033383.1 20 PWTRLEDKVFEQALVRFQEDlpdRWERIAGELP-GKTPKEVLEHYED 65
                     8******************9*************.**********976 PP
2Myb_DNA-binding476.1e-15113157347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W++I+r +  +Rt+ q+ s+ qky
      Pbr033383.1 113 PWTEEEHKLFLIGLKKFGKGDWRSISRNVVVTRTPTQVASHAQKY 157
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.1161371IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-71767IPR009057Homeodomain-like
SMARTSM007171.8E-71769IPR001005SANT/Myb domain
SuperFamilySSF466891.36E-111975IPR009057Homeodomain-like
CDDcd001674.85E-72067No hitNo description
PfamPF002499.5E-72066IPR001005SANT/Myb domain
PROSITE profilePS5129420.027106162IPR017930Myb domain
SuperFamilySSF466894.81E-17108163IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-17109161IPR006447Myb domain, plants
SMARTSM007172.5E-11110160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-11110156IPR009057Homeodomain-like
PfamPF002491.0E-12113157IPR001005SANT/Myb domain
CDDcd001679.81E-10113158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MFQETAPCWS SVVQSAASTP WTRLEDKVFE QALVRFQEDL PDRWERIAGE LPGKTPKEVL  60
EHYEDLVHDV LEIDSGRVNL PSYADESMVG WEDTASQITF GSNREPERKK GTPWTEEEHK  120
LFLIGLKKFG KGDWRSISRN VVVTRTPTQV ASHAQKYFLR QTSMKKERKR SSIHDITTVE  180
SNSVSVPADR NWIPPPAVPA HQSPLQHLTQ QSHLPDQGDL SGYQDFGYPM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-151683673RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr033383.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341585.11e-172PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H73e-60DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A498KHI21e-160A0A498KHI2_MALDO; Uncharacterized protein
STRINGXP_009341585.11e-171(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60683251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-68MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]