PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr033409.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

M-type_MADS

Protein Properties

Length: 235aa MW: 26314.7 Da PI: 9.7528

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr033409.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64.6	1e-20	30	78	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 kr+e+k +r+vtfskR+ gi+ KA ELSvL++ae a i++ss+gk++ + Pbr033409.1 30 KRVEDKNKRHVTFSKRKRGIFNKAAELSVLTGAETAAIVVSSNGKVFCF 78 799******************************************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.521	22	82	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-25	22	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-16	24	44	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.23E-24	24	94	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-19	31	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-16	44	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-16	59	80	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MAKGPNNKIT EKDIANGKKE REGPRRVEIK RVEDKNKRHV TFSKRKRGIF NKAAELSVLT 60 GAETAAIVVS SNGKVFCFGS PSPDAVIDRY LGDNTSLLPA GQPDNHLQNN NIHHSSSKKQ 120 IEDYVQASRR LKEAKVLKGG KNSNNNGGEG GERGCSYGWW DRRIGMMSSL EELEEYRDAL 180 YKLKHNVEVR TNRMIREASP SNHFSLLLFM DDIWSSPELS QGQGCMAPEF NFFI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mnm_A	1e-17	18	105	15	99	PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B	1e-17	18	105	15	99	PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr033409.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009357940.1	1e-175	PREDICTED: agamous-like MADS-box protein AGL29
Refseq	XP_009357941.1	1e-175	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A498HDU1	1e-136	A0A498HDU1_MALDO; Uncharacterized protein
STRING	XP_009357940.1	1e-175	(Pyrus x bretschneideri)
STRING	XP_009357941.1	1e-175	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16581	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-19	AGAMOUS-like 62