PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr033601.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 232aa    MW: 26031.7 Da    PI: 4.978
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr033601.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS61.12.3e-19144224290374
         GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++ ei+n+v+ eg++r+erhe++ +W   +++aGF++  l+   ++qa++++  v+  dgy+   e+++l+lgWk+rp++ +SaW+
  Pbr033601.1 144 VEHEIRNIVTFEGSNRIERHERADQW---IGRAGFQETGLK--CTSQARMMMISVYgCDGYTTATEKDCLLLGWKGRPIMLASAWQ 224
                  6789**********************...789****99996..67899999999888****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035147.8E-17144224IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEGFNAWLFF TLHESLNHDL SIRRFCLARL EQEQGGGRGG GEGAEQERIL LPRLTNLSTA  60
SSTWIIAFAL VIMTFNPWRN NKVVVVVVVL SIEYSDQDGI ETFSMVDDLY GVVLIMMEAE  120
DDHVDTSGLV DDFPVSKTKM RPRVEHEIRN IVTFEGSNRI ERHERADQWI GRAGFQETGL  180
KCTSQARMMM ISVYGCDGYT TATEKDCLLL GWKGRPIMLA SAWQARSVSS S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr033601.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008372004.25e-41DELLA protein RGL1-like
TrEMBLA0A314Z4Z16e-38A0A314Z4Z1_PRUYE; DELLA protein RGL1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2555633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.18e-16RGA-like 1