PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr033717.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 243aa    MW: 27225.8 Da    PI: 7.9409
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr033717.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.6e-1991145256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tkeq + Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k
  Pbr033717.1  91 RKKLRLTKEQSTLLEESFNRHSTLNLAQKQSLAEQLNLKPRQVEVWFQNRRARTK 145
                  678899***********************************************98 PP
2HD-ZIP_I/II1185.4e-3891178188
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                  +kk+rl+keq++lLEesF+++++L+  +K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+ en+rL++e +eL+
  Pbr033717.1  91 RKKLRLTKEQSTLLEESFNRHSTLNLAQKQSLAEQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCESLSIENRRLKQELQELK 178
                  69*************************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.71E-1879148IPR009057Homeodomain-like
PROSITE profilePS5007117.13587147IPR001356Homeobox domain
SMARTSM003891.5E-1489151IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-1791145IPR009057Homeodomain-like
PfamPF000463.0E-1691145IPR001356Homeobox domain
CDDcd000861.82E-1691148No hitNo description
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
SMARTSM003401.8E-17147192IPR003106Leucine zipper, homeobox-associated
PfamPF021833.9E-9147180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDGDEGACNT ELQLGLGVCE YASRQEKKDN PSVCLDLSFA LCPKKEVPSS DDHIANGSSL  60
KTMDEDEDSY ERSTEHTNIK GVIMNNKNVV RKKLRLTKEQ STLLEESFNR HSTLNLAQKQ  120
SLAEQLNLKP RQVEVWFQNR RARTKLKQTE VDCEFLKKCC ESLSIENRRL KQELQELKSL  180
NGDGTSPLYI QIPKATMLTI CPSCEKMVTA HHNNQAAAKK AENLNVVRRS SNKLQGGSDG  240
TI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr033717.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341742.11e-180PREDICTED: homeobox-leucine zipper protein HAT9-like
SwissprotP466046e-52HAT22_ARATH; Homeobox-leucine zipper protein HAT22
SwissprotP466651e-51HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A498I5Q81e-163A0A498I5Q8_MALDO; Uncharacterized protein
STRINGXP_009341742.11e-180(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-54HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]