PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr033804.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 685aa    MW: 75640.4 Da    PI: 6.4242
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr033804.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.65.7e-24116216198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+kvlt sd++++g +++ +k+a+e+       +   + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF +    ++e
  Pbr033804.1 116 FCKVLTASDTSTHGGFSVLRKHATEClpaldmtQ--ATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLR--GGNGE 209
                  99****************************9543..445569************************************************4..37889 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                  l+v+v+r
  Pbr033804.1 210 LRVGVRR 216
                  9****98 PP
2Auxin_resp1058.7e-35242321183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha++t++ F v+Y+Pr+  s+F++ ++k+++a+++k+svGmRfkm+fe+ed++err+sGt+vg++d++p +W +SkWrsLk
  Pbr033804.1 242 ASHAVATQTLFVVYYKPRT--SQFIIGLNKYLEAVNNKFSVGMRFKMRFEGEDAPERRFSGTIVGLEDISP-HWADSKWRSLK 321
                  789***************6..9***********************************************99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-40104245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-40110231IPR015300DNA-binding pseudobarrel domain
CDDcd100174.04E-20114216No hitNo description
PfamPF023625.0E-22116216IPR003340B3 DNA binding domain
SMARTSM010191.6E-22116218IPR003340B3 DNA binding domain
PROSITE profilePS5086312.351116218IPR003340B3 DNA binding domain
PfamPF065072.5E-32242321IPR010525Auxin response factor
PfamPF023091.4E-11551659IPR033389AUX/IAA domain
SuperFamilySSF542775.89E-14573651No hitNo description
PROSITE profilePS5174525.319575656IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MANREGGDLY PELWKACAGP LVDVPRVQER VFYFPQGHME QLEASTPTNQ ELNQGIPQFN  60
LPPKIICRVV NVTLLAEQET DEVYAQITLI PDANQTEPTS PDPCLPEPQK PAVHSFCKVL  120
TASDTSTHGG FSVLRKHATE CLPALDMTQA TPTQELVAKD LHGYEWRFKH IFRGQPRRHL  180
LTTGWSTFVT SKRLSAGDSF VFLRGGNGEL RVGVRRLARQ QSSMPSSVIS SQSMHVGVLA  240
TASHAVATQT LFVVYYKPRT SQFIIGLNKY LEAVNNKFSV GMRFKMRFEG EDAPERRFSG  300
TIVGLEDISP HWADSKWRSL KVHWDESASI PRPDRVSPWE IEPFVASVIP SLPQPSVVVK  360
NKRPRPPTEI PALDAMSSTG SATWNSVLTQ PHDLSTLSVA AEGKRSENHV VWHHQQADVI  420
SNNNSVPRTQ TDGGWLSSQA GGSPHMFQET MEDSKSVSAW PVFSGYSTPN SSKPKNDSMF  480
DHVEKEKKTE MGTSCRIFGI DFTSHSTCFP AMEKAPPQPI SGSTGTTEGR VSNKLAAESD  540
QKSDLSKASK ESKPGQLQVS PKETQSKQSC STSARSRTKV QMQGIAVGRA VDLTMLEGYD  600
QLIDELEEMF DIKGQIRPGN MWQIVFTDNE GDMMLMGDDP WSEFCDMVKR IFICSSQDVK  660
KISAGCELPM SSLEVEGGTV ISSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-169934419355Auxin response factor 1
4ldw_A1e-169934419355Auxin response factor 1
4ldw_B1e-169934419355Auxin response factor 1
4ldx_A1e-169934419355Auxin response factor 1
4ldx_B1e-169934419355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361365KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr033804.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341874.10.0PREDICTED: auxin response factor 9-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A498I7X60.0A0A498I7X6_MALDO; Auxin response factor
STRINGXP_009341874.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9