PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr033953.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WOX
Protein Properties Length: 246aa    MW: 28122.7 Da    PI: 8.2345
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr033953.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.9e-191271357
                 --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 +R+++++eql  Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Pbr033953.1 12 SRWCPSPEQLMLLEEMYRAgIRTPNASQIQHITAQLssygKIEGKNVFYWFQNHKARDRQ 71
                 8*****************99*************************************996 PP
2Wus_type_Homeobox116.71.1e-371072264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +++RW+P+peQ+++Lee+y++G+rtPn+++iq+ita+L++yGkie+kNVfyWFQN+kaR+rqk
        Pbr033953.1 10 SSSRWCPSPEQLMLLEEMYRAGIRTPNASQIQHITAQLSSYGKIEGKNVFYWFQNHKARDRQK 72
                       689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-11575IPR009057Homeodomain-like
PROSITE profilePS5007110.43772IPR001356Homeobox domain
SMARTSM003891.4E-4976IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-71271IPR009057Homeodomain-like
PfamPF000464.6E-171271IPR001356Homeobox domain
CDDcd000861.83E-41372No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSPAANSSSS SSRWCPSPEQ LMLLEEMYRA GIRTPNASQI QHITAQLSSY GKIEGKNVFY  60
WFQNHKARDR QKLRKKLYEQ LQQQQLLYHH HNYHNYRNCH YEQQLNQQTF LGYLESPPPV  120
PSALHHKQLS TCHHHNNYSS TGFLPPQVGV EDALINYTWK MEIPEKVERE KSVMSMYGHE  180
WMMMMMNVSP PSPCCTSSSS STTTTTTSTP PLKTLQLFPI TATDLKEEST PSRSALSSST  240
LTENH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr033953.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009358281.10.0PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBLA0A498KAV81e-127A0A498KAV8_MALDO; Uncharacterized protein
STRINGXP_009358281.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106322940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.15e-32WOX family protein