PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr033988.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 258aa    MW: 29552.2 Da    PI: 8.1044
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr033988.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-161057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed +lv+ v ++G ++W+ Ia+  g++Rt+k+c++rw +yl
      Pbr033988.1 10 RGPWTEKEDFQLVCFVGLFGDRRWDFIAKVSGLKRTGKSCRLRWVNYL 57
                     89********************************************97 PP
2Myb_DNA-binding55.81.1e-1763108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
      Pbr033988.1  63 RGKMTPQEERLVLELHTKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.893557IPR017930Myb domain
SuperFamilySSF466891.91E-288104IPR009057Homeodomain-like
SMARTSM007173.6E-14959IPR001005SANT/Myb domain
PfamPF002499.4E-151057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-191164IPR009057Homeodomain-like
CDDcd001678.34E-101257No hitNo description
PROSITE profilePS5129427.05458112IPR017930Myb domain
SMARTSM007172.4E-1662110IPR001005SANT/Myb domain
PfamPF002492.6E-1563107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-2465111IPR009057Homeodomain-like
CDDcd001674.38E-1165108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVQDQEQIRR GPWTEKEDFQ LVCFVGLFGD RRWDFIAKVS GLKRTGKSCR LRWVNYLHPG  60
LKRGKMTPQE ERLVLELHTK WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQEKKRAVS  120
PSSSYSNCSS SSNITTAEGG ASFYDTGGKE TKASSGEKKT GGGDEAKEDE KREQREYSLD  180
DIWKDINLPE VNIIEPVYDA NLSSCPLMAS PTPWEYCSDL LWKMDEEEES KNMFLPTPSG  240
DHQFLSCYEY GKASLTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-27101124105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-26711255159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-26711255159MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-27101124105C-Myb DNA-Binding Domain
1msf_C4e-27101124105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr033988.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009358321.10.0PREDICTED: transcription factor MYB59-like isoform X1
SwissprotQ9LX822e-88MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A498KFS31e-173A0A498KFS3_MALDO; Uncharacterized protein
STRINGXP_009358321.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.14e-88myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]