PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr034417.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 231aa MW: 25986.4 Da PI: 9.0576

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr034417.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.3	1.3e-48	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrF+Ptdeelv +yL+ kv + +l++ ++i+e++++ ++PwdLp ++e+e yfFs++++ky++g+r+nr+t sgyWkatg dk+++s+ ++ Pbr034417.1 14 LPPGFRFQPTDEELVFQYLRCKVFSCPLPA-SIIPEINVCMYDPWDLP---GNSEQERYFFSNKESKYRNGNRANRVTGSGYWKATGADKKIVSSrRN 107 79**************************.89***********...446889*******************************998677 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + vg kktLvfy+g++p+ +ktdWvmhey l Pbr034417.1 108 HIVGKKKTLVFYRGKSPHVSKTDWVMHEYCL 138 78*************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-57	8	168	IPR003441	NAC domain
PROSITE profile	PS51005	54.129	14	168	IPR003441	NAC domain
Pfam	PF02365	4.6E-25	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MDKFKFVGNG MIRLPPGFRF QPTDEELVFQ YLRCKVFSCP LPASIIPEIN VCMYDPWDLP 60 GNSEQERYFF SNKESKYRNG NRANRVTGSG YWKATGADKK IVSSRRNHIV GKKKTLVFYR 120 GKSPHVSKTD WVMHEYCLVN TETTASIHTT ENALTPKGNW VLCRVFSKKR SGKIDEEIVV 180 NYNSIEVNNN ANPASSSSSC SSSTGITEVT SPSKECGEEI SSCRKFDHVN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-45	12	173	15	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-45	12	173	15	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-45	12	173	15	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-45	12	173	15	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-45	12	173	18	173	NAC domain-containing protein 19
3swm_B	1e-45	12	173	18	173	NAC domain-containing protein 19
3swm_C	1e-45	12	173	18	173	NAC domain-containing protein 19
3swm_D	1e-45	12	173	18	173	NAC domain-containing protein 19
3swp_A	1e-45	12	173	18	173	NAC domain-containing protein 19
3swp_B	1e-45	12	173	18	173	NAC domain-containing protein 19
3swp_C	1e-45	12	173	18	173	NAC domain-containing protein 19
3swp_D	1e-45	12	173	18	173	NAC domain-containing protein 19
4dul_A	1e-45	12	173	15	170	NAC domain-containing protein 19
4dul_B	1e-45	12	173	15	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr034417.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009342208.1	1e-172	PREDICTED: NAC domain-containing protein 83-like
Refseq	XP_009342214.1	1e-172	PREDICTED: NAC domain-containing protein 83-like
Swissprot	Q9FY93	2e-79	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A498JQ41	1e-148	A0A498JQ41_MALDO; Uncharacterized protein
STRING	XP_009342208.1	1e-172	(Pyrus x bretschneideri)
STRING	XP_009342214.1	1e-172	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	3e-81	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]