PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr034525.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 721aa MW: 78826.2 Da PI: 5.321

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr034525.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	315.5	1.2e-96	361	719	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 +++L+++Ae +++g+ laq +Larl+++ sp g+p+ R a+yf+eAL+ l+ ++s++++al+p + + ++ a+k fse+sP++ f+++t+ Pbr034525.1 361 IDQLFNAAELIETGNSVLAQGILARLNHQLSPIGKPFSRTAFYFKEALQFLLNTnTSSNCSSALSP-----FSLIFKIGAYKSFSEISPVVHFANFTC 453 689***********************************************99333444444333.....3479******************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 NqaIleaveg +rvH+iDfdi++G+QW++++q+ a R++g psl+iT++ s++++++ e++ t+e+L++fA+el++ fe +++ +le+l+ +L + Pbr034525.1 454 NQAILEAVEGFNRVHVIDFDIGYGGQWASFMQEVALRNGGVPSLKITAFISSSTHDEFEVSFTRENLEHFASELNLAFELELV---SLESLNSGSLGL 548 ************************************************99**************************8...788888888755 PP GRAS 197 kp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 E +aV + l + ++ ++++sl+ +L++vk+lsP++vv ++ +d+++ +F +++++al+ ys l++s++a + ++ +k+Er ll++ Pbr034525.1 549 PLhaSEGVAVAVNLPIGSFSNNPLSLPL----ILRFVKQLSPRIVVSLDRGSDRTDVPFPHQIIQALYSYSGLLESIDAA-NVNPDALQKIERYLLQP 641 4444888888888888999999999999....*****************************************665.34668999***** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 i+++v+ + ++ +Wr + ++GF+p+++s+++++qa++l++++++ g+++e+++ slvl+W+ + L+s+SaWr Pbr034525.1 642 GIEKIVTGCHLL----PKRTPSWRTLFLSSGFSPLTFSNFTESQAECLVQRTPVGGFHIEKRQSSLVLCWQCKDLISASAWR 719 **988887....89999**********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.803	334	699	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.1E-94	361	719	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MWAALSPPLF SIPEEAQALR HPPQHCLPPT AAEPAVAAAX XXXXXXXXXX XXXXXXXXSG 60 AGGGCGRSTD TTTAGVENPS RTPLEEQKCG PPLGMEDWES VLSESPGQEQ SILRLIMSDI 120 EDPSLGLNTL LQSSSGSDHL HQDLEFSGGG FQDVVDQGGY GGGFEPNNNS GSLVSPSLHA 180 SSGPDFNFSN NASNVETRSS NVRPNHAIFS ASMSNPFLVS QSSGMFQQQQ SMGLDEKPQI 240 FNPQMVINQN QAQFAQHPAM FMPLTYAQLQ EHHLLSPPPS KRLNSGELGP SYPVQRVPFS 300 NPGQELVVRA QQQLQFLPQH LQQQRPTMPV AKEKMMSPAE GCKEMMNQNQ LQQQQFQQAV 360 IDQLFNAAEL IETGNSVLAQ GILARLNHQL SPIGKPFSRT AFYFKEALQF LLNTNTSSNC 420 SSALSPFSLI FKIGAYKSFS EISPVVHFAN FTCNQAILEA VEGFNRVHVI DFDIGYGGQW 480 ASFMQEVALR NGGVPSLKIT AFISSSTHDE FEVSFTRENL EHFASELNLA FELELVSLES 540 LNSGSLGLPL HASEGVAVAV NLPIGSFSNN PLSLPLILRF VKQLSPRIVV SLDRGSDRTD 600 VPFPHQIIQA LYSYSGLLES IDAANVNPDA LQKIERYLLQ PGIEKIVTGC HLLPKRTPSW 660 RTLFLSSGFS PLTFSNFTES QAECLVQRTP VGGFHIEKRQ SSLVLCWQCK DLISASAWRC 720 *

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MWAALSPPLF SIPEEAQALR HPPQHCLPPT AAEPAVAAAX XXXXXXXXXX XXXXXXXXSG  60
AGGGCGRSTD TTTAGVENPS RTPLEEQKCG PPLGMEDWES VLSESPGQEQ SILRLIMSDI  120
EDPSLGLNTL LQSSSGSDHL HQDLEFSGGG FQDVVDQGGY GGGFEPNNNS GSLVSPSLHA  180
SSGPDFNFSN NASNVETRSS NVRPNHAIFS ASMSNPFLVS QSSGMFQQQQ SMGLDEKPQI  240
FNPQMVINQN QAQFAQHPAM FMPLTYAQLQ EHHLLSPPPS KRLNSGELGP SYPVQRVPFS  300
NPGQELVVRA QQQLQFLPQH LQQQRPTMPV AKEKMMSPAE GCKEMMNQNQ LQQQQFQQAV  360
IDQLFNAAEL IETGNSVLAQ GILARLNHQL SPIGKPFSRT AFYFKEALQF LLNTNTSSNC  420
SSALSPFSLI FKIGAYKSFS EISPVVHFAN FTCNQAILEA VEGFNRVHVI DFDIGYGGQW  480
ASFMQEVALR NGGVPSLKIT AFISSSTHDE FEVSFTRENL EHFASELNLA FELELVSLES  540
LNSGSLGLPL HASEGVAVAV NLPIGSFSNN PLSLPLILRF VKQLSPRIVV SLDRGSDRTD  600
VPFPHQIIQA LYSYSGLLES IDAANVNPDA LQKIERYLLQ PGIEKIVTGC HLLPKRTPSW  660
RTLFLSSGFS PLTFSNFTES QAECLVQRTP VGGFHIEKRQ SSLVLCWQCK DLISASAWRC  720
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-27	378	719	21	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr034525.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009349895.1	0.0	PREDICTED: scarecrow-like protein 6, partial
Swissprot	O81316	1e-137	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A498KF99	0.0	A0A498KF99_MALDO; Uncharacterized protein
STRING	XP_009342426.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3183	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-129	GRAS family protein

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]