PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr034559.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

S1Fa-like

Protein Properties

Length: 77aa MW: 8331.03 Da PI: 10.608

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr034559.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	127.7	3.4e-40	12	76	6	70
S1FA 6 veakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +akGlnPG+ivl+vv gll++flvgny+lyvyaq++lPP+kkkPvskkklk+e+lkqGv++PGe Pbr034559.1 12 SDAKGLNPGIIVLIVVVGLLVIFLVGNYALYVYAQRTLPPKKKKPVSKKKLKKERLKQGVSAPGE 76 589*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	1.0E-38	13	76	IPR006779	DNA binding protein S1FA
ProDom	PD019013	0.004	15	76	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
MADQFEDKVP PSDAKGLNPG IIVLIVVVGL LVIFLVGNYA LYVYAQRTLP PKKKKPVSKK 60 KLKKERLKQG VSAPGE*

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr034559.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009358155.1	1e-46	PREDICTED: DNA-binding protein S1FA
Swissprot	Q7XLX6	7e-19	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	W9SCA3	7e-25	W9SCA3_9ROSA; DNA-binding protein S1FA1
STRING	XP_009358155.1	5e-46	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5409	33	55

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]