PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr034585.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NF-YB
Protein Properties Length: 193aa    MW: 21763.1 Da    PI: 8.4327
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr034585.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB136.48.1e-431841795
        NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtse.....asdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95
                 mkk+lPan+ki+kdaketvqecvsefisf+tse     asdkcqrekrktingddllwa+atlGfedy++plkvyl+kyre ++
  Pbr034585.1  1 MKKALPANGKIAKDAKETVQECVSEFISFITSEydvvlASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLTKYREGDT 84
                 9*******************************9888889*****************************************9665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008082.5E-17160IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.1E-281108IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.1E-39198IPR009072Histone-fold
PRINTSPR006151.2E-171937No hitNo description
PRINTSPR006151.2E-174361No hitNo description
PRINTSPR006151.2E-176280No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MKKALPANGK IAKDAKETVQ ECVSEFISFI TSEYDVVLAS DKCQREKRKT INGDDLLWAM  60
ATLGFEDYID PLKVYLTKYR EGDTKGSGKG GDSSSKKDVQ PSPNPQIARQ GSFSQGGNYS  120
NSQVISCSLF LHTYLFFRIF FSFNQVSLIL IVVQIIDGCP FIANIFPYKL LSFPSIYKQY  180
IYDIFLCRVL FY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B3e-341811994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-341811994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr034585.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162719.11e-72hypothetical protein PHAVU_001G174600g
RefseqXP_007162720.14e-72hypothetical protein PHAVU_001G174600g, partial
SwissprotQ67XJ21e-59NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBLA0A1R3HQG84e-72A0A1R3HQG8_COCAP; Transcription factor, CBFA/NFYB, DNA topoisomerase
STRINGXP_007162720.11e-71(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25453382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.11e-51nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]