PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr034610.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 241aa    MW: 26902.6 Da    PI: 6.5304
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr034610.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.92e-211562249
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 +i n+   qvtfskRrng++KKA+EL++LC+ae+a+++fs+  k++ +
  Pbr034610.1 15 KITNEASLQVTFSKRRNGLFKKASELCTLCGAEIALMVFSPGKKVFSF 62
                 58899999*********************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.862666IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-29665IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.02E-26792IPR002100Transcription factor, MADS-box
CDDcd002654.85E-34775No hitNo description
PRINTSPR004048.9E-18828IPR002100Transcription factor, MADS-box
PfamPF003191.5E-241562IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-184364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MARTSRGRQR VPMTKITNEA SLQVTFSKRR NGLFKKASEL CTLCGAEIAL MVFSPGKKVF  60
SFGHPCFETL IDRFEGRLSL AQLTMGHDMQ QMLEAYRSVS LNVLSQDLTK VMVLVDNEKK  120
LGVNISQTMK ESMSENWWER PLEEIETDRL EFLKTYMEEL GCKVNETRGK MLLPQVFETA  180
NDNNNFFVGS SSSNTAAGPY DQMMQTYANQ PSSSTGGGLN ENTSTWPFSA WNPSLGGGFL  240
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr034610.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009358240.11e-180PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A498JVU71e-173A0A498JVU7_MALDO; Uncharacterized protein
STRINGXP_009358240.11e-179(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2286644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-45AGAMOUS-like 62