PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr034884.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 210aa    MW: 24440.3 Da    PI: 11.2533
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr034884.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-18113158148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE++l+++++++lG++ W++Ia +++ gRt++q+k++w+++l
      Pbr034884.1 113 RGDFSEEEEDLIIRLHNLLGNR-WSLIAGRVP-GRTDNQVKNYWNTHL 158
                      899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.55276107IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-1189119IPR009057Homeodomain-like
SuperFamilySSF466891.88E-2293165IPR009057Homeodomain-like
PROSITE profilePS5129426.225108162IPR017930Myb domain
SMARTSM007176.5E-17112160IPR001005SANT/Myb domain
PfamPF002492.0E-17113158IPR001005SANT/Myb domain
CDDcd001677.80E-12116158No hitNo description
Gene3DG3DSA:1.10.10.602.3E-22120158IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MPEWNEGLND NRTHPLRRVR PYLSHCRRVQ CHPSHLLPNP RRLIPQAMTS ATSCEWVVLR  60
FSRRRATVSL WDWQGGGRRW GWVWMGLLGL GLGRSGKSCR LRWLNHLSPN VKRGDFSEEE  120
EDLIIRLHNL LGNRWSLIAG RVPGRTDNQV KNYWNTHLYK KLNAIKKQQT PRKVAVVSAK  180
VNICQQSVFP KEKFCRQFCS AKCVAEFCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-219316439110B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr034884.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008351055.13e-66transcription factor WER-like
STRINGXP_008351055.11e-65(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.19e-36myb domain protein 66