PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr035125.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 234aa    MW: 25975.1 Da    PI: 6.8487
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr035125.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP94.97.9e-30138203166
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTT CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrL 66 
                  +C+++gC++dls+ak y+rrh vCe h kap v+vsg+++rfC +Csrfh+lsefD++k+sCrr++
  Pbr035125.1 138 ICKADGCAVDLSDAKAYNRRHWVCELHWKAPLVIVSGQKRRFCHKCSRFHDLSEFDDTKQSCRRHF 203
                  5**************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-29132200IPR004333Transcription factor, SBP-box
PROSITE profilePS5114123.658136213IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.46E-29137205IPR004333Transcription factor, SBP-box
PfamPF031102.9E-24139202IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAKSAVGLNA LSVEGTRDVT ETLYPEANIK VGWRKVEESR VAQSKTEHPS HAVGLDAMNM  60
QVGARTMEET SVSDVEAGHK RIQGKEVSKL DVPFRVLGKD VLKDEEDEEL DEQVEDHHDR  120
KKKGAESATG ASGDGMPICK ADGCAVDLSD AKAYNRRHWV CELHWKAPLV IVSGQKRRFC  180
HKCSRFHDLS EFDDTKQSCR RHFPYTERDG TGTQLKDVSG DINRVLKKST PSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-23130204176squamosa promoter binding protein-like 4
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr035125.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959575.11e-135uncharacterized protein LOC103437407
TrEMBLA0A498JPL61e-122A0A498JPL6_MALDO; Uncharacterized protein
STRINGXP_009358732.11e-171(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3832522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.19e-27squamosa promoter binding protein-like 5