PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr035227.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 407aa    MW: 45674.7 Da    PI: 8.8264
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr035227.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.5e-1570129155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Pbr035227.1  70 SRFRGVSRHRWTGRFEAHLWDkLSWNItqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 129
                  789******************888855655447*************************98 PP
2AP256.37.8e-18172223155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++gt eeAa+a++ a+ +++g
  Pbr035227.1 172 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYRG 223
                  89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-1370129IPR001471AP2/ERF domain
CDDcd000184.96E-1970139No hitNo description
SuperFamilySSF541713.14E-1670139IPR016177DNA-binding domain
PROSITE profilePS5103219.54671137IPR001471AP2/ERF domain
SMARTSM003809.7E-2471143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1571138IPR001471AP2/ERF domain
PRINTSPR003673.0E-57283IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18172233IPR016177DNA-binding domain
CDDcd000182.63E-24172233No hitNo description
PfamPF008472.8E-13172223IPR001471AP2/ERF domain
PROSITE profilePS5103218.742173231IPR001471AP2/ERF domain
SMARTSM003808.0E-26173237IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-18173232IPR001471AP2/ERF domain
PRINTSPR003673.0E-5213233IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MELMMVKSEE NRGRRRLSAA DREVQAARCV KRRRRDPPAV TVSSDNNQIE LQLPQKPADQ  60
TPATTMKRSS RFRGVSRHRW TGRFEAHLWD KLSWNITQKK KGKQVYLGAY DEEESAARAY  120
DLAALKYWGA STFTNFPISD YEKEIEIMQS VTKEEYLASL RRKSSGFSRG VSKYRGVARH  180
HHNGRWEARI GRVFGNKYLY LGTYGTQEEA ARAYDIAAIE YRGINAVTNF DLSSYIRWLK  240
PKAGDTIATQ ELEAVTEPQK MPFMANGYIP ADETSFPHTN PFASDYLNSP RNQEVTRSST  300
NLNAGSKSSS PTALGLLLQS SIFRELVQKN SNLSEDDSTD DEEPKNQPQA GSNEEYGGIF  360
HAGTGENPFV CSSGTDGENP WNNIASTILL NQPTKANASD SLFFFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11334RRRLSAADREVQAARCVKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr035227.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009342869.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A498J1R00.0A0A498J1R0_MALDO; Uncharacterized protein
STRINGXP_009342869.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.35e-95AP2 family protein