PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr035354.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 701aa MW: 77641.8 Da PI: 8.2904

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr035354.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	76	97	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H Pbr035354.1 76 KCDKCPREFCSSINYRRHIRVH 97 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.034	75	102	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	77	98	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
MSIAKPTTSN SLYAMKTEEE SDSLDTIIRQ AAKEPSISFS RAGESPVPWI QLLHALDQQE 60 LPGWPLHSPI KVQMQKCDKC PREFCSSINY RRHIRVHHRL KKLDKDSSKN RELLGEFWDK 120 LSPEEAKEAV SFKNVTLEEV PGSSIIKALT TLIRKPGFSP FPHIYLKAGS ALLDIVQARP 180 SRFPISSQEL FSILDDASEM TFLSGTAISM QRYIFDGDAW KIGLESKNLV ACTSFLVEQK 240 LLKAWHADKD TEALRLQKLL VEEEEAAQRR QTELLERKRQ KKLRQKEQKE KDQGHGEKID 300 VKENIDETLD AVPLVETSSP SATFDSDTAS SDMLDHACLS LESFQLSNTD VSADPESQTG 360 VSIGHVDSVS GPNVERRVVQ GNGSRRAAAR WQLSPKSQRG VPNGFHGGHS SQTSKHSSTQ 420 HHGNHRDARA ASSGNRVWSR KPKPEYDGRS LKAGVQKEAS EPDQIKNREV LIGSIPVNLG 480 NCCQESNNQA GVHDECLSEK GQVPKDNSQD KTNKPDLVQS GTNRSTVKLW RPVSRNGTKG 540 PMPIQNGSKE SDINVVAERG NSQNLHSENC ERSRVVDGHN VGNGNGSTHP DETGRLGFSS 600 HAAKDFLAQR WKDAIAADHV ELVLFQDSEP PRCPENQDDR EVAATHPSRF KRSILGNAEN 660 RLANGEAFDL PTAGAAKVRR RTKHDKGVKI KYIPKHSAVA *

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

MSIAKPTTSN SLYAMKTEEE SDSLDTIIRQ AAKEPSISFS RAGESPVPWI QLLHALDQQE  60
LPGWPLHSPI KVQMQKCDKC PREFCSSINY RRHIRVHHRL KKLDKDSSKN RELLGEFWDK  120
LSPEEAKEAV SFKNVTLEEV PGSSIIKALT TLIRKPGFSP FPHIYLKAGS ALLDIVQARP  180
SRFPISSQEL FSILDDASEM TFLSGTAISM QRYIFDGDAW KIGLESKNLV ACTSFLVEQK  240
LLKAWHADKD TEALRLQKLL VEEEEAAQRR QTELLERKRQ KKLRQKEQKE KDQGHGEKID  300
VKENIDETLD AVPLVETSSP SATFDSDTAS SDMLDHACLS LESFQLSNTD VSADPESQTG  360
VSIGHVDSVS GPNVERRVVQ GNGSRRAAAR WQLSPKSQRG VPNGFHGGHS SQTSKHSSTQ  420
HHGNHRDARA ASSGNRVWSR KPKPEYDGRS LKAGVQKEAS EPDQIKNREV LIGSIPVNLG  480
NCCQESNNQA GVHDECLSEK GQVPKDNSQD KTNKPDLVQS GTNRSTVKLW RPVSRNGTKG  540
PMPIQNGSKE SDINVVAERG NSQNLHSENC ERSRVVDGHN VGNGNGSTHP DETGRLGFSS  600
HAAKDFLAQR WKDAIAADHV ELVLFQDSEP PRCPENQDDR EVAATHPSRF KRSILGNAEN  660
RLANGEAFDL PTAGAAKVRR RTKHDKGVKI KYIPKHSAVA *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	275	282	ERKRQKKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr035354.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018499936.1	0.0	PREDICTED: uncharacterized protein LOC103934912
TrEMBL	A0A498JGX4	0.0	A0A498JGX4_MALDO; Uncharacterized protein
STRING	XP_009342945.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4517	27	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-122	C2H2-like zinc finger protein