PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr035386.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 800aa MW: 87503.4 Da PI: 6.8862

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr035386.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	330.2	3.8e-101	435	798	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++L+++Ae v +g+++ aq +Larl+++ sp g+p+qR+a+yf+eAL+ l+ + + + + pp++ ++ + + ++ a+k+fsevsP+l+f ++t+N Pbr035386.1 435 LDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLMNNPAT--SPPPRTPTPFDIIFKMGAYKVFSEVSPLLQFVNFTCN 530 679************************************************955554..57888899999********************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..elee 193 qa+lea++ +++Hi+Dfdi+ G++W++++q+L R+ +++pslRiT++ sp++++ el+ ++++L++fA+e+g++f+ +v+ ++l++ +l Pbr035386.1 531 QALLEALSDTDQIHIVDFDIGFGAHWASFMQELPIRNrgASAPSLRITAFTSPSTHHPVELRLMRDNLTQFANEIGISFDLEVVNIDSLDQNsySLPI 628 ******************************99966779*************************************988877766224556 PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 +r +++Ea+aVn+ + ++ +++++l++ vL++vk+lsPk+vv ++ +d+++ +F +++l+al+ y l++sl+a +s++ +k+Er+ll+ Pbr035386.1 629 FRANNNEAVAVNFPI--WSTSNQPAALPN----VLRFVKQLSPKIVVSLDRGCDRSDLPFPQHILQALQSYINLLESLDAV-NVTSDAVNKIERFLLQ 719 78888****99..666678999999....*****************************************665.579********* PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++i++ v + + ++ W+ + +aGF+pvp+s+++++qa++++++ + +g++ve++++slvl+W++r+L+s+SaWr Pbr035386.1 720 PKIESTVLGRLRT----PDKMPLWKTLFASAGFTPVPFSNFTETQAECVVKRNPARGFHVEKRQESLVLCWQRRELISASAWR 798 ***998887....9999***********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.214	408	778	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-98	435	798	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 800 aa Download sequence Send to blast
MPFQFQQGKG VIEIATASLP AIFTDSSCSK YKDGGFFNHH HHSFPTSEPN SVLHMRRSPS 60 PPTSASTLSS SFNNGGGGGD KSTPLAAETP PAVGPTSSKD EWACELQSIP SGGLEAVTGS 120 AGGVQRCGLG LGGLEDWETM LSETAASPGH DQSLLRWIAG DVDDTSFGLK QLLQSGNNHH 180 HHHNSPLDFD GNAGLGVVDQ GPNFDLIGNG GVSDPNFGFG GSGFGNGSNK GSNGKLGFVP 240 PGSGSFGLLN YKVSNVESMH NNGGSNSVNC NIQNPIFSNS SNTLALPVSL PAVYGQQQLS 300 PDEKPQILNP QLFMSNQNQQ PQVAQNPNFF MPLAYAQQEQ HHLLQSQPKR HNSGTNIDPS 360 THQIQKGQFS DPGQEFFMRK QQQQQFGFAQ GMQFLPQQHR IQQKPLMVPK QKVVLGNGEE 420 MAHHQQQQQL QHTLLDQLYK AAELVGTGNF SHAQGILARL NHQLSPVGKP LQRAAFYFKE 480 ALQLLLLMNN PATSPPPRTP TPFDIIFKMG AYKVFSEVSP LLQFVNFTCN QALLEALSDT 540 DQIHIVDFDI GFGAHWASFM QELPIRNRGA SAPSLRITAF TSPSTHHPVE LRLMRDNLTQ 600 FANEIGISFD LEVVNIDSLD QNSYSLPIFR ANNNEAVAVN FPIWSTSNQP AALPNVLRFV 660 KQLSPKIVVS LDRGCDRSDL PFPQHILQAL QSYINLLESL DAVNVTSDAV NKIERFLLQP 720 KIESTVLGRL RTPDKMPLWK TLFASAGFTP VPFSNFTETQ AECVVKRNPA RGFHVEKRQE 780 SLVLCWQRRE LISASAWRC*

Sequence ? help Back to Top

Protein Sequence Length: 800 aa Download sequence Send to blast

MPFQFQQGKG VIEIATASLP AIFTDSSCSK YKDGGFFNHH HHSFPTSEPN SVLHMRRSPS  60
PPTSASTLSS SFNNGGGGGD KSTPLAAETP PAVGPTSSKD EWACELQSIP SGGLEAVTGS  120
AGGVQRCGLG LGGLEDWETM LSETAASPGH DQSLLRWIAG DVDDTSFGLK QLLQSGNNHH  180
HHHNSPLDFD GNAGLGVVDQ GPNFDLIGNG GVSDPNFGFG GSGFGNGSNK GSNGKLGFVP  240
PGSGSFGLLN YKVSNVESMH NNGGSNSVNC NIQNPIFSNS SNTLALPVSL PAVYGQQQLS  300
PDEKPQILNP QLFMSNQNQQ PQVAQNPNFF MPLAYAQQEQ HHLLQSQPKR HNSGTNIDPS  360
THQIQKGQFS DPGQEFFMRK QQQQQFGFAQ GMQFLPQQHR IQQKPLMVPK QKVVLGNGEE  420
MAHHQQQQQL QHTLLDQLYK AAELVGTGNF SHAQGILARL NHQLSPVGKP LQRAAFYFKE  480
ALQLLLLMNN PATSPPPRTP TPFDIIFKMG AYKVFSEVSP LLQFVNFTCN QALLEALSDT  540
DQIHIVDFDI GFGAHWASFM QELPIRNRGA SAPSLRITAF TSPSTHHPVE LRLMRDNLTQ  600
FANEIGISFD LEVVNIDSLD QNSYSLPIFR ANNNEAVAVN FPIWSTSNQP AALPNVLRFV  660
KQLSPKIVVS LDRGCDRSDL PFPQHILQAL QSYINLLESL DAVNVTSDAV NKIERFLLQP  720
KIESTVLGRL RTPDKMPLWK TLFASAGFTP VPFSNFTETQ AECVVKRNPA RGFHVEKRQE  780
SLVLCWQRRE LISASAWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-31	453	798	22	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr035386.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009343059.1	0.0	PREDICTED: scarecrow-like protein 22
TrEMBL	A0A498JTP0	0.0	A0A498JTP0_MALDO; Uncharacterized protein
STRING	XP_009343059.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13269	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-119	GRAS family protein