PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr035693.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 144aa    MW: 16088.5 Da    PI: 4.7268
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr035693.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.11.2e-1627115195
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  f+ v t+++v  s ++v+p kf ++    + +s   t+ ++ g+ We+++  + +sg+  + ++W+eFv++n++k+gD +vF+l + s+++l ++
  Pbr035693.1  27 FEVVITKANVKPSYQMVIPAKFQQTL---PSCS-IPTVLTLGGKNWEMTY--THGSGQRKFDTNWREFVNDNNMKVGDACVFELLECSSTKLIFR 115
                  7788999999************8655...2344.5578899*********..888888889**********************875566666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-1922120IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-1922114IPR015300DNA-binding pseudobarrel domain
CDDcd100174.90E-2025120No hitNo description
SMARTSM010195.5E-627118IPR003340B3 DNA binding domain
PfamPF023628.1E-1527115IPR003340B3 DNA binding domain
PROSITE profilePS5086312.7627122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MGDQPTSNSM IELQGDEFWP LSEKPFFEVV ITKANVKPSY QMVIPAKFQQ TLPSCSIPTV  60
LTLGGKNWEM TYTHGSGQRK FDTNWREFVN DNNMKVGDAC VFELLECSST KLIFRVQILR  120
GDIPSELLGK LKGETVDAPI IID*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr035693.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341640.11e-102PREDICTED: B3 domain-containing protein Os04g0386900-like
RefseqXP_018499603.11e-102PREDICTED: B3 domain-containing protein Os04g0386900-like
RefseqXP_018499604.11e-102PREDICTED: B3 domain-containing protein Os04g0386900-like
RefseqXP_018499605.11e-102PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A498KGX41e-93A0A498KGX4_MALDO; Uncharacterized protein
STRINGXP_009343236.19e-96(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.17e-11related to vernalization1 1