PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr035763.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

ERF

Protein Properties

Length: 251aa MW: 27873.8 Da PI: 5.5552

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr035763.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.9	4.5e-17	88	137	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ a++ ++g Pbr035763.1 88 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPIPEMAARAHDVAALTIKG 137 69**998.******843...6********************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	8.9E-37	88	151	IPR001471	AP2/ERF domain
Pfam	PF00847	1.8E-11	88	137	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.5E-20	88	146	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	8.5E-31	88	146	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.906	88	145	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.1E-12	89	100	IPR001471	AP2/ERF domain
CDD	cd00018	7.83E-32	89	147	No hit	No description
PRINTS	PR00367	6.1E-12	127	147	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MEEEQFNFID CEAQTTSSSY SNSTTSQSQK ISKRSSSSNQ LELLVGHQKA ATTLTTNDDD 60 DQISKKKSKI KKRINGDGRQ QRHPHHPTYR GVRMRQWGKW VSEIREPRKK SRIWLGTFPI 120 PEMAARAHDV AALTIKGSSA VLNFPELAQE LPIPASASPK DIQAAAAKAA ALTFPSSSLE 180 QEAEVETELM SQAVHDSSPH DSSSTSPSTN YNDDTLFDLP DLLLDVGHHS DHGFIFSVPW 240 LDEEPEFLWE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-17	86	145	12	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr035763.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009368950.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF039-like
Swissprot	Q9SUK8	2e-47	ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBL	A0A498JQM2	1e-132	A0A498JQM2_MALDO; Uncharacterized protein
STRING	XP_009368950.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	4e-43	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]