PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr035774.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 302aa    MW: 33867.7 Da    PI: 6.6932
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr035774.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20191242256
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                  +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAa+a+++a+ kl+g+
  Pbr035774.1 191 HYRGVRQRP-WGKYAAEIRDP---NrRGSRVWLGTFDTAIEAARAYDRAAFKLRGA 242
                  8********.**********9...4334**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.08E-30190249No hitNo description
Gene3DG3DSA:3.30.730.102.6E-32190250IPR001471AP2/ERF domain
PROSITE profilePS5103224.316191249IPR001471AP2/ERF domain
SMARTSM003804.3E-35191255IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23191250IPR016177DNA-binding domain
PfamPF008471.5E-14191241IPR001471AP2/ERF domain
PRINTSPR003679.2E-11192203IPR001471AP2/ERF domain
PRINTSPR003679.2E-11215231IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MALDHVSALE LIKHHLLGEF SPVKSCATEP SDPGSSFTQN QWSPEDNSDL SRSQSESFCS  60
KSSSTFDSSI EISDYLDSSD IFEFNSAGFF DFEEKPQAID LTTPKSTNLS SQNSFEFDSK  120
PLVSDDYFEF EQKPQILKQT DPKPANSIRK PALTISLPNK TEWIQFASSD QAAVKPATVQ  180
KASSNEEKKK HYRGVRQRPW GKYAAEIRDP NRRGSRVWLG TFDTAIEAAR AYDRAAFKLR  240
GAKSILNFPL EAGKAEPVAS VERKRRRQEH REDAKAVVAV KKEKLTETPL TPSSWMAFWD  300
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-28188256270ATERF1
3gcc_A1e-28188256270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262266RKRRR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr035774.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324320.0GU732432.1 Malus x domestica AP2 domain class transcription factor (AP2D8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505970.10.0PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotO803413e-62EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A498JN730.0A0A498JN73_MALDO; Uncharacterized protein
STRINGXP_008355567.11e-160(Malus domestica)
STRINGXP_008369419.11e-160(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-53ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]