PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr035801.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 259aa    MW: 28804.2 Da    PI: 8.2754
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr035801.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.9e-056991123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y C+ C+k F++   L  H++ H
  Pbr035801.1 69 YACNSCDKAFPTTQALGGHQNAH 91
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.09E-66795No hitNo description
PfamPF139123.0E-76994IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.036996IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-46995IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MLNFMFKSPS MFNNSRSSAH RSTIAPCNRS PSISPCNPIT SDTSISMMYP MSPILGSCLY  60
FHNHGSCKYA CNSCDKAFPT TQALGGHQNA HRKERNDLRA NEVAHAAREN LRFRPYVFPH  120
DPWRWAPPSI YNDFINKTKP RMRSYDFYHF LGMAGDCNPK WGAGLGFGSG SKRKKRGYDD  180
NDDARADHDK KKGKYVGVVD DLKVSMSNVT LSLATGSGDV EKSDSGLDWE DGEYMYVVGG  240
DGEASTSRTE ELDLNLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr035801.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007203500.11e-64uncharacterized protein LOC18769515
TrEMBLA0A498IDJ21e-178A0A498IDJ2_MALDO; Uncharacterized protein
STRINGXP_008387230.11e-156(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1510933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.14e-08C2H2 family protein