PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr035834.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 309aa    MW: 32273.2 Da    PI: 9.9326
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr035834.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-06111133527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                   C+ +     Ck+Gd+C+FaHg+
  Pbr035834.1 111 MCSKYNSPEGCKFGDKCHFAHGE 133
                  5666666667***********96 PP
2zf-CCCH36.48.5e-12275299126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt+lC++f + GtC +G+rC+FaHg
  Pbr035834.1 275 YKTKLCDNFTK-GTCTFGERCHFAHG 299
                  9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.2533570IPR000571Zinc finger, CCCH-type
SMARTSM00356103569IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-12103138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.793106134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-7107137IPR000571Zinc finger, CCCH-type
SMARTSM003560.94108133IPR000571Zinc finger, CCCH-type
SMARTSM003222.6E-12174244IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.107.4E-17174245IPR004088K Homology domain, type 1
PROSITE profilePS5008414.152175239IPR004088K Homology domain, type 1
PfamPF000131.8E-11177241IPR004088K Homology domain, type 1
SuperFamilySSF547914.09E-15177266IPR004088K Homology domain, type 1
CDDcd001058.24E-15177239No hitNo description
Gene3DG3DSA:4.10.1000.101.1E-16270305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-9272304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.511274301IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-8274300IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9275299IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDTRKRGRHE GGGFHSNGGF KKNKQELESF STGVGSKSKP CTKFFRFKSF SSNTAGCPFG  60
ESCHFLHYVP GGYNAVAKMM NLAPAPPPPR NIPGPPSHSN GSNSSGVKSR MCSKYNSPEG  120
CKFGDKCHFA HGEWELGKPL AQSHDDPRAM GPGPGRMGNW MEPHLAGPAS SFGASSTAKI  180
SVDASHAGAI IGKGGVHSKQ ICLQTGAKLS IRDHESNPNL RNIELEGTFE QIQQASAMVS  240
ELISTVSTSG PGKAPGAGGG GGGGRGAPAP PRSNYKTKLC DNFTKGTCTF GERCHFAHGA  300
AELRKSGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr035834.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009369606.11e-180PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-103C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A498I3E11e-177A0A498I3E1_MALDO; Uncharacterized protein
STRINGXP_009369606.11e-179(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-58C3H family protein