PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr035838.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 685aa    MW: 76028.4 Da    PI: 9.9178
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr035838.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.3e-091969347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47
                      W t+E++ll+ av+++G+ +W+++a ++         +t+  ck +++++
      Pbr035838.1 19 TWGTWEELLLAGAVHRFGTQSWNSVATELRkrssnlDFLTPHACKRKFHDL 69
                     7*****************************888888788899999988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002491.3E-81969IPR001005SANT/Myb domain
CDDcd001670.001561969No hitNo description
SMARTSM002971.7E-10110420IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.2E-16298429IPR001487Bromodomain
SuperFamilySSF473703.27E-17299423IPR001487Bromodomain
CDDcd043694.07E-14321415No hitNo description
PfamPF004393.4E-9326405IPR001487Bromodomain
PROSITE profilePS5001411.367329401IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MIFLMDNKPP NFPQKQTPTW GTWEELLLAG AVHRFGTQSW NSVATELRKR SSNLDFLTPH  60
ACKRKFHDLR RRFNHSDNMS AASDDDKSPI PWLDQLRQRR LDELRRELQR YDRSIVCLQS  120
KVKRLKEVRE HSLKETEKPV EKSDLEKTGE EEIKPDDVLA DKKDISGDLL VHDGQSFDES  180
NTTDRKPQEP GTGYAGTGNG SDPNKPVEPA GEEIGSAEKS SNPAVQDSCN GSSDSVAKEP  240
AGMESEKGNS GELRESMAES KGGEEGTKES RQSSSEVKSS VRLSIKAGND PEPVGPGEPS  300
EPEREDQSPA TKRVPVESQP LVDFLDILRS HKFASLFERR LHSQDNPIYT KMIRQHVDFE  360
MVQTRLEGGW YSHCSRMLFF RDLLIIYNNA IVFFGKMSPE YKAACELRSL VSKEMARLAP  420
KQDAPSEEEI LTQPAPPLNP DPETSDSFLA KSKLSLPLNA CCKRSSIAAR ASTSSLGPDT  480
RKKQATCDVK PAVNWKQKEE SSDEIEKFRV TKKRRKEGLG SSTRNNTSKN IRTRSYTNNN  540
RSSDANENSE SKAETEKKRV VSSNENSETK AETEKKRNNN ASGKKRSAAN FLMKSSSPKT  600
GSLLETSKNP ENNSKGRRAE QRKNGNGKGN TQKDQGSRRS SGGRQATKEQ ESASKRSAGR  660
PSKRAAAAAP TTAGPTKRAR GRGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1511515KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr035838.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009369641.10.0PREDICTED: uncharacterized protein LOC103959030
TrEMBLA0A498IDU10.0A0A498IDU1_MALDO; Uncharacterized protein
STRINGXP_009369641.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-67DNA-binding bromodomain-containing protein