PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr035842.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

G2-like

Protein Properties

Length: 201aa MW: 22848.9 Da PI: 8.108

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr035842.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.6	7.7e-30	40	94	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r rWt++LH++Fve+v+ LGG+ kA Pk+il+lm+v+gLt+ hvkSHLQk+R Pbr035842.1 40 KTRFRWTQDLHQKFVECVNCLGGAYKAPPKSILKLMNVDGLTIFHVKSHLQKFRN 94 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.69E-17	38	94	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-27	38	95	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-21	40	94	IPR006447	Myb domain, plants
Pfam	PF00249	2.3E-6	44	92	IPR001005	SANT/Myb domain
Pfam	PF14379	4.1E-12	125	164	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MNEQKIDCQE RIQQSHDYIS QFVSTTYGYS PSGRHVLSSK TRFRWTQDLH QKFVECVNCL 60 GGAYKAPPKS ILKLMNVDGL TIFHVKSHLQ KFRNAAFPPG SAKGKSEKRT TSNVEPQLDV 120 ETGLHIKKAI QLELDVQQHL HEQLEIKRNL QLQIEELGKQ LKNLNELRID LQLKNSDTTF 180 YEGAPLSSLD DEFIGLSINT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-21	40	97	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-21	40	97	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-21	40	97	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-21	40	97	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-21	40	97	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-21	40	97	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-21	40	97	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-21	40	97	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr035842.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009370155.1	1e-113	PREDICTED: myb family transcription factor PHL5-like
Swissprot	Q0WVU3	2e-53	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A498IIX6	2e-96	A0A498IIX6_MALDO; Uncharacterized protein
STRING	XP_009370155.1	1e-113	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3740	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	8e-56	G2-like family protein