PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr035927.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 362aa MW: 39263.5 Da PI: 5.3067

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr035927.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.1	3.1e-16	43	88	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v +G ++W++Iar + gR++k+c++rw + Pbr035927.1 43 KGPWSPEEDAVLTRLVSNFGARNWSLIARGID-GRSGKSCRLRWCNQ 88 79****************************.*********985 PP
2	Myb_DNA-binding	56.6	5.7e-18	95	139	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd +v a++ +G++ W++Iar ++ gRt++ +k++w++ Pbr035927.1 95 RKPFTDEEDRMIVAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 139 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.54	38	89	IPR017930	Myb domain
SuperFamily	SSF46689	7.91E-30	41	136	IPR009057	Homeodomain-like
SMART	SM00717	4.2E-13	42	91	IPR001005	SANT/Myb domain
Pfam	PF00249	4.9E-15	43	88	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.7E-26	44	96	IPR009057	Homeodomain-like
CDD	cd00167	9.51E-13	45	87	No hit	No description
PROSITE profile	PS51294	26.76	90	144	IPR017930	Myb domain
SMART	SM00717	2.3E-17	94	142	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-15	95	139	IPR001005	SANT/Myb domain
CDD	cd00167	3.65E-13	97	140	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.5E-24	97	143	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
METEVADHPA AVDIDAGYGG GDSGEEAGAG GGSRRKSGRD NVKGPWSPEE DAVLTRLVSN 60 FGARNWSLIA RGIDGRSGKS CRLRWCNQLD PAVKRKPFTD EEDRMIVAAH AIHGNKWAAI 120 ARLLPGRTDN AIKNHWNSTL KRRCMDPDRI KLESGNMVED VSCDKTKGSS EETFSYGDVN 180 SSKSMEGREV SSLEHMDDQD EYNGSSEVQF SHEATEQPTL FRPMARISAF SVYNQSNSQE 240 PASSFPRPIP VQGPLVQASK LDVGINKFLE GVYGERSVPD QCGHGCCRAQ SGMNFQNSLL 300 GPELVEFSEP PLFPTFELAA IATDISNLAW LKSGLENNSV RAVGETAGRI TTHGSRPNGA 360 F*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

METEVADHPA AVDIDAGYGG GDSGEEAGAG GGSRRKSGRD NVKGPWSPEE DAVLTRLVSN  60
FGARNWSLIA RGIDGRSGKS CRLRWCNQLD PAVKRKPFTD EEDRMIVAAH AIHGNKWAAI  120
ARLLPGRTDN AIKNHWNSTL KRRCMDPDRI KLESGNMVED VSCDKTKGSS EETFSYGDVN  180
SSKSMEGREV SSLEHMDDQD EYNGSSEVQF SHEATEQPTL FRPMARISAF SVYNQSNSQE  240
PASSFPRPIP VQGPLVQASK LDVGINKFLE GVYGERSVPD QCGHGCCRAQ SGMNFQNSLL  300
GPELVEFSEP PLFPTFELAA IATDISNLAW LKSGLENNSV RAVGETAGRI TTHGSRPNGA  360
F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	6e-41	40	143	4	107	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr035927.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ074459	0.0	DQ074459.1 Malus x domestica MYB2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018503498.1	0.0	PREDICTED: transcription factor MYB44-like
Swissprot	Q42575	2e-98	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A498IGU2	0.0	A0A498IGU2_MALDO; Uncharacterized protein
TrEMBL	D9ZJ63	0.0	D9ZJ63_MALDO; MYB domain class transcription factor
STRING	XP_008388098.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3986	33	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	2e-99	myb domain protein 1

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]