PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr036101.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 313aa    MW: 35030.3 Da    PI: 4.6912
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr036101.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.9e-1989142356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k++++t++q++ Le+ F  ++++  e++  LAk lgL+ rqV +WFqNrRa++k
  Pbr036101.1  89 KKRRLTADQVRFLEKSFDVENKLEPERKVLLAKDLGLQPRQVAIWFQNRRARWK 142
                  56689************************************************9 PP
2HD-ZIP_I/II128.33.1e-4189178291
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  kkrrl+++qv++LE+sF+ e+kLeperKv la++Lglqprqva+WFqnrRAR+ktk+lEkdye+L+++y++lk++ e+L+ke+++L++e+
  Pbr036101.1  89 KKRRLTADQVRFLEKSFDVENKLEPERKVLLAKDLGLQPRQVAIWFQNRRARWKTKHLEKDYEVLQANYNNLKANCESLSKENDKLKAEV 178
                  9**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-1974145IPR009057Homeodomain-like
PROSITE profilePS5007116.76384144IPR001356Homeobox domain
SMARTSM003893.3E-1886148IPR001356Homeobox domain
CDDcd000863.63E-1787145No hitNo description
PfamPF000464.4E-1689142IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-1991151IPR009057Homeodomain-like
PRINTSPR000319.0E-5115124IPR000047Helix-turn-helix motif
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PRINTSPR000319.0E-5124140IPR000047Helix-turn-helix motif
PfamPF021833.7E-14144185IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAGGRVYGGR NSSVLSALLQ NQKSSEPLDS LFLSGSSNSS SSSFLGSRSM VSFEDVRGGS  60
GSNRSLFHQY EHEDNGEDDL DEYPHQPGKK RRLTADQVRF LEKSFDVENK LEPERKVLLA  120
KDLGLQPRQV AIWFQNRRAR WKTKHLEKDY EVLQANYNNL KANCESLSKE NDKLKAEVLV  180
LSDKLSDTNK LSQEPPHKPI ADSASEGEVS KVSAVASKQE DHSSGRSDIF DSDSPHYTDG  240
VHSSLMEPGD SSYVFEPEQS DLSQDEEDNF SKSLLPPYIF PKLEDVDYSD TPANSCNFGF  300
PVEDHAFWSW SY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr036101.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009343428.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLA0A498HX630.0A0A498HX63_MALDO; Uncharacterized protein
STRINGXP_009343428.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.18e-46homeobox 1