PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr036250.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 427aa MW: 48870.7 Da PI: 6.3082

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr036250.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.5	3.2e-27	73	154	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rr m+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y++++e Pbr036250.1 73 WVQDETRSLIALRRGMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGS---GSAKMSYYKEIE 154 ******************************************************************84...556899*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.211	65	129	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.1E-4	65	134	IPR009057	Homeodomain-like
SMART	SM00717	0.0012	69	131	IPR001005	SANT/Myb domain
CDD	cd12203	1.24E-29	71	136	No hit	No description
Pfam	PF13837	7.4E-21	72	156	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MYLPEKARPI DFYKEEASRD MMMEVVVSNE DLPQSQSQSQ AHLQQPLPQQ MLMGDSSGED 60 HEVRAPKKRA ETWVQDETRS LIALRRGMDG LFNTSKSNKH LWEQISAKMR EKGFDRSPTM 120 CTDKWRNLLK EFKKAKHHDR GSGSAKMSYY KEIEEILKDR SKNTQYKSPT PPKVDSFVQF 180 SDKDNGGDLS FDLPCFNVPY QERNRPCNLR RTAAQIRNFF DGFSAHAGIE DASISFAPVE 240 ASGRPTLNLE RRLDHDGHPL AITAADAVTA GGVPPWNWRE TPGNGVEGQA YGGRVILVNW 300 GDYTRRIGID GTADAIKDAI KSAFRLRTKR SFWLEDEDQI VRSLDRDMPL GNYTLHLDEG 360 VAIKVCLYDE SDHIPVHTEE KLFFTEEDYR EFLSRRGWSY LREFDGYRNI ENMDDLRPGA 420 IYRGVS*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MYLPEKARPI DFYKEEASRD MMMEVVVSNE DLPQSQSQSQ AHLQQPLPQQ MLMGDSSGED  60
HEVRAPKKRA ETWVQDETRS LIALRRGMDG LFNTSKSNKH LWEQISAKMR EKGFDRSPTM  120
CTDKWRNLLK EFKKAKHHDR GSGSAKMSYY KEIEEILKDR SKNTQYKSPT PPKVDSFVQF  180
SDKDNGGDLS FDLPCFNVPY QERNRPCNLR RTAAQIRNFF DGFSAHAGIE DASISFAPVE  240
ASGRPTLNLE RRLDHDGHPL AITAADAVTA GGVPPWNWRE TPGNGVEGQA YGGRVILVNW  300
GDYTRRIGID GTADAIKDAI KSAFRLRTKR SFWLEDEDQI VRSLDRDMPL GNYTLHLDEG  360
VAIKVCLYDE SDHIPVHTEE KLFFTEEDYR EFLSRRGWSY LREFDGYRNI ENMDDLRPGA  420
IYRGVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	3e-53	67	152	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr036250.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009359290.1	0.0	PREDICTED: trihelix transcription factor GT-1 isoform X2
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A498HL35	0.0	A0A498HL35_MALDO; Uncharacterized protein
STRING	XP_009359289.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6817	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]