PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr036766.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 301aa    MW: 32268 Da    PI: 5.4353
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr036766.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.65.4e-16207243135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg+
  Pbr036766.1 207 CTHCGISSksTPMMRRGPAGPRTLCNACGLKWANKGS 243
                  *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.6E-1165100IPR010399Tify domain
PROSITE profilePS5132014.42165100IPR010399Tify domain
PfamPF062002.1E-126899IPR010399Tify domain
PfamPF062033.1E-16138180IPR010402CCT domain
PROSITE profilePS5101713.245138180IPR010402CCT domain
SMARTSM004013.3E-11201256IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.95E-10204248No hitNo description
Gene3DG3DSA:3.30.50.102.8E-13205243IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.79E-13206242No hitNo description
PfamPF003201.0E-13207243IPR000679Zinc finger, GATA-type
PROSITE patternPS003440207234IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAESEHQNSI YSSTEGVTQS NQVDDQDDDV EEPIDNPNIR FEDSTAIPPN QLYLPSSEYP  60
PPAAANGASD QLTLSFHGEV YVFDAVSPDK VQAVLLLLGG YEIPSGIPSM GPVPLNQQVG  120
TFRYGMNDLP ARPTQPQRAA SLSRFREKRK ERCFDKKIRY TVRKEVALRM QRKKGQFTSS  180
KGSSDDGGPA SSTQVSGQDE SMQETSCTHC GISSKSTPMM RRGPAGPRTL CNACGLKWAN  240
KGSLTGVPKV LNVGIQDPSL KGIEQIDGGV QDSDVVAMGA NIAPSSANGN NSAMTVDRKL  300
*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr036766.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009343815.10.0PREDICTED: GATA transcription factor 24-like isoform X1
SwissprotQ8GXL71e-71GAT24_ARATH; GATA transcription factor 24
TrEMBLD9ZIY80.0D9ZIY8_MALDO; GATA domain class transcription factor
STRINGXP_009343815.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.16e-74ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]