PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr036879.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 25327.3 Da    PI: 11.3344
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr036879.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.5e-28959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gk y ++s
  Pbr036879.1  9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPSGKSYQFAS 59
                 79**********************************************986 PP
2K-box58.82.3e-20851601085
        K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                   ++++e++++e + L+k i +L+  +R+l+Ge+L++L ++eL+qLe+qL++++++iRsk  +++ e+++ l++k k
  Pbr036879.1  85 RARTMEYWRNENEELRKSIGKLEMRLRNLVGEELSTLGVQELKQLERQLKTGVERIRSKMRRIISENVSLLKRKIK 160
                  46679****************************************************************9999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.296161IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-31277IPR002100Transcription factor, MADS-box
CDDcd002652.59E-36270No hitNo description
PRINTSPR004042.6E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-303859IPR002100Transcription factor, MADS-box
PfamPF014868.7E-1788160IPR002487Transcription factor, K-box
PROSITE profilePS5129710.78389182IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP SGKSYQFASH  60
DITRTISMYK REVGLPESNN SSFGRARTME YWRNENEELR KSIGKLEMRL RNLVGEELST  120
LGVQELKQLE RQLKTGVERI RSKMRRIISE NVSLLKRKIK LRELNFADAT CSTTSVGANA  180
RISAFPRPTR RQRSSISLCS RGSKESSGCL IPILPRAHLG SRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-21169169MEF2 CHIMERA
6byy_B7e-21169169MEF2 CHIMERA
6byy_C7e-21169169MEF2 CHIMERA
6byy_D7e-21169169MEF2 CHIMERA
6bz1_A7e-21169169MEF2 CHIMERA
6bz1_B7e-21169169MEF2 CHIMERA
6bz1_C7e-21169169MEF2 CHIMERA
6bz1_D7e-21169169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269|PubMed:22176531, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr036879.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640250.0KP164025.1 Pyrus pyrifolia clone PpTM8-2 TM8-like MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359418.11e-127PREDICTED: MADS-box transcription factor 23-like
SwissprotQ388361e-45AGL11_ARATH; Agamous-like MADS-box protein AGL11
TrEMBLA0A0D4ZYR51e-127A0A0D4ZYR5_PYRPY; TM8-like MADS-box protein
STRINGXP_009359417.11e-128(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.42e-48MIKC_MADS family protein
Publications ? help Back to Top
  1. Ezquer I, et al.
    The Developmental Regulator SEEDSTICK Controls Structural and Mechanical Properties of the Arabidopsis Seed Coat.
    Plant Cell, 2016. 28(10): p. 2478-2492
    [PMID:27624758]