PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037202.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 267aa    MW: 29227.2 Da    PI: 4.814
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037202.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552.1e-1759110155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr++  + +Wv+e r+p   + k+ r++lg++ tae+Aa+a++ a+++++g
  Pbr037202.1  59 PVYRGVRRRN-NDKWVCEMREP---NkKKSRIWLGTYPTAEMAARAHDVAALAFRG 110
                  68*****887.8******9998...5477************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-1359110IPR001471AP2/ERF domain
SMARTSM003801.3E-2860124IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2160120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-3060120IPR001471AP2/ERF domain
PROSITE profilePS5103222.73460118IPR001471AP2/ERF domain
PRINTSPR003671.5E-76172IPR001471AP2/ERF domain
CDDcd000184.98E-2861120No hitNo description
PRINTSPR003671.5E-784100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MNTISRQLSD SAERPESSSD TSVTTRSHLT SFSDEEVILA SSTPKKRAGR RVFNETRHPV  60
YRGVRRRNND KWVCEMREPN KKKSRIWLGT YPTAEMAARA HDVAALAFRG RLACLNFADS  120
AWRLPVPASP DSVDSAWRLP VPASTDSVDI RRAAAEAAET FRPAEFGGVS ESGDDEKESK  180
KMEGEKDCGG AEQSDCGGAE QSDCGGAEQS GSSFYLDEEE MFAMPRLLDS MAEGLLLSPP  240
RRSAGGNMNW DDMGSNDDVN LWSFSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13581171271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037202.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8264950.0AB826495.1 Pyrus pyrifolia var. culta mRNA for putative C-repeat binding factor 4, partial cds, clone: Pyrpyr_CBF#1403.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018500259.11e-174PREDICTED: dehydration-responsive element-binding protein 1A-like
TrEMBLA0A498K0A21e-163A0A498K0A2_MALDO; Uncharacterized protein
STRINGXP_009344260.11e-174(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-60C-repeat-binding factor 4