PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037204.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 192aa    MW: 20900.2 Da    PI: 4.5859
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037204.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.86.5e-14650955
          AP2  9 dkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++++ +Wv+e r+p   + k+ r++lg++ tae+Aa+a++ a+++++g
  Pbr037204.1  6 RRNNDKWVCEMREP---NkKKSRIWLGTYPTAEMAARAHDVAALAFRG 50
                 56689*****9998...5477************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.902158IPR001471AP2/ERF domain
CDDcd000189.12E-25360No hitNo description
SuperFamilySSF541712.48E-18560IPR016177DNA-binding domain
SMARTSM003801.2E-21564IPR001471AP2/ERF domain
PfamPF008474.4E-10550IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-26560IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSPLRRRNND KWVCEMREPN KKKSRIWLGT YPTAEMAARA HDVAALAFRG RLACLNFADS  60
AWRLPVPAST DSVDIRRAAA EAAETFRPAE FGGVSESGDD EKKSKKMEGE KDCGGAEQSD  120
CGGAEQSDCG GAEQSGSSFY LDEEEMFAMP RLLDSMAEGL LLSPPRRSAG GSMNWDDMGS  180
NDDVNLWSFS K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037204.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5435030.0KC543503.1 Malus x domestica CBF/DREB 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018500258.11e-138PREDICTED: dehydration-responsive element-binding protein 1D-like
TrEMBLA0A498K0A21e-122A0A498K0A2_MALDO; Uncharacterized protein
STRINGXP_009377921.11e-136(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.13e-44C-repeat/DRE binding factor 1