PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr037212.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 682aa MW: 74765.9 Da PI: 5.554

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr037212.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	429.6	2.4e-131	297	666	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 lv+lL++c+ea+ ++ +++++++a+l elasp+g+++ Rl ay+teAL+ r++r +++++++ +p++ +++++++ + l+l+++vsPi+kf h+t Pbr037212.1 297 LVSLLTACVEAIGLKNIAAINHFIAKLGELASPKGSAISRLSAYYTEALSLRVTRLWPHVFQINAPRKFDRRDEDSGI-ELRLLNQVSPIPKFVHFTS 393 6899***************************************************************976666665.569************ PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+ sk+el+etg+rLa fA +l++pfef++ v++rled++l++L+v Pbr037212.1 394 NEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGE----SKQELNETGDRLAGFAGALNLPFEFHP-VVDRLEDVRLWMLHV 486 ***********************************************....***********************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 k++E++aVn+v+qlh++l + + + +++L l++s++P++v v+eqea+hn++++ +r++++l+yysa+fds+ ++lp es++rikvE++ +++ei Pbr037212.1 487 KEHESVAVNCVFQLHKTLYDATGGA--LRDFLGLIRSTNPTIVLVAEQEAEHNESKLETRVSNSLKYYSAIFDSIGSSLPLESQARIKVEEM-FAQEI 581 *************96554444..589**********************************************************.* PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.....sgslvlgWkdrpLvsvSaWr 374 +n++aceg++r erhe++ekWr+ +e+ GF+ v ++e+++ q + ll++++s+ y+v+++ ++l+l W+d+pL++vSaW+ Pbr037212.1 582 RNIIACEGSDRLERHESFEKWRKLMEQEGFRCVGITEREMLQSQFLLKMYASENYTVKKQekdgaAEALTLSWMDQPLYTVSAWT 666 ***********************************************999766667677899************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.283	271	641	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.4E-129	297	666	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence Send to blast
MLAGCSSSTL LSPRHRLRSE AAAQLQACSF QLPSMSTQRL DLPCSFPRKD TSRSQPIRPV 60 GLSVEKSIDS KAGGCSLKQS IRLPPLATSG PVTATAAFVE TGKENHDQFW GEKKRGKRFA 120 EPVDDDESFR KRAKRKRGSG DNGGDGEGGG GLSLGQLGGG NFWFQPGFHL PPTTQPPFSL 180 TCSGDEERVC YVPAEEISQP LPLSNNPWLD SIVTEITDLG KKDGGGEASR GLVGEGSAGS 240 STSSESQSLA LRVNESASEH DTGNGTRNPY VPHGGAGVVA EEEEDDESEA EHLGFELVSL 300 LTACVEAIGL KNIAAINHFI AKLGELASPK GSAISRLSAY YTEALSLRVT RLWPHVFQIN 360 APRKFDRRDE DSGIELRLLN QVSPIPKFVH FTSNEILLRA FEGKDRVHII DFDIKQGLQW 420 PSLFQSLASR TNPPSHVRIT GIGESKQELN ETGDRLAGFA GALNLPFEFH PVVDRLEDVR 480 LWMLHVKEHE SVAVNCVFQL HKTLYDATGG ALRDFLGLIR STNPTIVLVA EQEAEHNESK 540 LETRVSNSLK YYSAIFDSIG SSLPLESQAR IKVEEMFAQE IRNIIACEGS DRLERHESFE 600 KWRKLMEQEG FRCVGITERE MLQSQFLLKM YASENYTVKK QEKDGAAEAL TLSWMDQPLY 660 TVSAWTPVDA AGSSSSFSQP S*

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence Send to blast

MLAGCSSSTL LSPRHRLRSE AAAQLQACSF QLPSMSTQRL DLPCSFPRKD TSRSQPIRPV  60
GLSVEKSIDS KAGGCSLKQS IRLPPLATSG PVTATAAFVE TGKENHDQFW GEKKRGKRFA  120
EPVDDDESFR KRAKRKRGSG DNGGDGEGGG GLSLGQLGGG NFWFQPGFHL PPTTQPPFSL  180
TCSGDEERVC YVPAEEISQP LPLSNNPWLD SIVTEITDLG KKDGGGEASR GLVGEGSAGS  240
STSSESQSLA LRVNESASEH DTGNGTRNPY VPHGGAGVVA EEEEDDESEA EHLGFELVSL  300
LTACVEAIGL KNIAAINHFI AKLGELASPK GSAISRLSAY YTEALSLRVT RLWPHVFQIN  360
APRKFDRRDE DSGIELRLLN QVSPIPKFVH FTSNEILLRA FEGKDRVHII DFDIKQGLQW  420
PSLFQSLASR TNPPSHVRIT GIGESKQELN ETGDRLAGFA GALNLPFEFH PVVDRLEDVR  480
LWMLHVKEHE SVAVNCVFQL HKTLYDATGG ALRDFLGLIR STNPTIVLVA EQEAEHNESK  540
LETRVSNSLK YYSAIFDSIG SSLPLESQAR IKVEEMFAQE IRNIIACEGS DRLERHESFE  600
KWRKLMEQEG FRCVGITERE MLQSQFLLKM YASENYTVKK QEKDGAAEAL TLSWMDQPLY  660
TVSAWTPVDA AGSSSSFSQP S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-74	304	667	26	380	Protein SCARECROW
5b3h_A	7e-74	304	667	25	379	Protein SCARECROW
5b3h_D	7e-74	304	667	25	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr037212.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009344268.1	0.0	PREDICTED: scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	A0A498K6Q1	0.0	A0A498K6Q1_MALDO; Uncharacterized protein
STRING	XP_009344268.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9161	32	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein