PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr037325.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

WOX

Protein Properties

Length: 278aa MW: 31597.2 Da PI: 5.8017

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr037325.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.1	5.4e-22	95	155	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+lFe+ n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Pbr037325.1 95 RQRWTPTPVQLQILERLFEQgNGTPSKQKIKEITTELsqhgQISETNVYNWFQNRRARSKR 155 89***************99************************************97 PP
2	Wus_type_Homeobox	101.8	5e-33	94	157	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+l+++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Pbr037325.1 94 ARQRWTPTPVQLQILERLFEQGNGTPSKQKIKEITTELSQHGQISETNVYNWFQNRRARSKRKQ 157 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-18	90	160	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.289	91	156	IPR001356	Homeobox domain
SMART	SM00389	1.4E-14	93	160	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.89E-19	94	160	IPR009057	Homeodomain-like
Pfam	PF00046	9.3E-20	95	155	IPR001356	Homeobox domain
CDD	cd00086	3.78E-13	95	157	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MMEWDKQQLK EQQEMEGNGN GSGNNGNGGV MYVKVMTDEQ LETLRKQIAV YATICEQLVE 60 MHKNLTAQQD LAGVRMGNLY CDPLMTSTGH KITARQRWTP TPVQLQILER LFEQGNGTPS 120 KQKIKEITTE LSQHGQISET NVYNWFQNRR ARSKRKQQNA ACNHAESEVE TEVDSPKDKK 180 TRPEETFQSQ QHSAQRTEDL CFQSPEISSD LHFLDPHATA VDKMFPSHCG LRSSRHLSEM 240 SFYDEVLANS RHELMTGKME AGNYSLFQEA EDYGMTG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	156	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr037325.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009359599.1	0.0	PREDICTED: WUSCHEL-related homeobox 13
Swissprot	O81788	1e-95	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A498HY46	0.0	A0A498HY46_MALDO; Uncharacterized protein
STRING	XP_009359599.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	5e-97	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]