PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037414.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 208aa    MW: 23209.6 Da    PI: 4.5348
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037414.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.8e-171665255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +ykGVr +k +g+Wv+eIr p++   r r++lg+++ +e+Aa+a +aa  +l+g
  Pbr037414.1 16 KYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDAPEKAARAFDAALFCLRG 65
                 8*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.56E-291675No hitNo description
Gene3DG3DSA:3.30.730.106.5E-291675IPR001471AP2/ERF domain
PROSITE profilePS5103221.8911673IPR001471AP2/ERF domain
PfamPF008472.1E-101665IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-201675IPR016177DNA-binding domain
SMARTSM003801.6E-321679IPR001471AP2/ERF domain
PRINTSPR003677.6E-91728IPR001471AP2/ERF domain
PRINTSPR003677.6E-93955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MVKQTIGKPS ERNDIKYKGV RKRKWGKWVS EIRLPNSRER IWLGSYDAPE KAARAFDAAL  60
FCLRGRTAKF NFPDSPPEIS GGRSLSPAEI QTEAARFANS ELPRSHQSMS ELQAESASPS  120
VSEGSGTVFV DSEFLVTPND SFSDPFSTFG SGNYSTEYGL FPGFDEMNYQ FFSPAEAVPT  180
PDVDYYAEEN LDSQFFSPAE QSFLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1416731472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11723KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037414.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324801e-161GU732480.1 Malus x domestica AP2 domain class transcription factor (AP2D56) mRNA, complete cds.
GenBankJQ3976361e-161JQ397636.1 Malus zumi DREB1 mRNA, complete cds.
GenBankJQ6698211e-161JQ669821.1 Malus x domestica dehydration-responsive element-binding protein (DREB5) (DREB5-2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359712.11e-151PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC23e-61ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A498I0961e-137A0A498I096_MALDO; Uncharacterized protein
STRINGXP_009359712.11e-150(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-63ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]