PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037444.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 170aa    MW: 19355.3 Da    PI: 10.8313
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037444.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.66.8e-28959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 kri+n + r vtfskRrng+lKKA+ELS+LCdaevavi+fs++gk ye++s
  Pbr037444.1  9 KRIDNPTSRDVTFSKRRNGLLKKAFELSILCDAEVAVIVFSHSGKAYEFAS 59
                 79***********************************************86 PP
2K-box60.66.2e-2184159984
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                    ++++e++++e + L++ i+nL+  +++l Ge+L++L ++eL+qLe+qL++++++iRsk  +++ e+++ l++k 
  Pbr037444.1  84 RRARTMEYWRNETEGLRRSIQNLEMRLKNLAGEELSTLGMQELKQLERQLKTGVERIRSKSRQIISENVNLLKRKG 159
                  566789*******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.314161IPR002100Transcription factor, MADS-box
SMARTSM004326.4E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.22E-30279IPR002100Transcription factor, MADS-box
CDDcd002659.53E-37270No hitNo description
PRINTSPR004042.6E-29323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.8E-1788160IPR002487Transcription factor, K-box
PROSITE profilePS5129710.54489169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MGRGKVELKR IDNPTSRDVT FSKRRNGLLK KAFELSILCD AEVAVIVFSH SGKAYEFASH  60
DINRTIAMYR REVGLPEANN STFRRARTME YWRNETEGLR RSIQNLEMRL KNLAGEELST  120
LGMQELKQLE RQLKTGVERI RSKSRQIISE NVNLLKRKGY VLAATPAAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-19169169MEF2 CHIMERA
6bz1_B1e-19169169MEF2 CHIMERA
6bz1_C1e-19169169MEF2 CHIMERA
6bz1_D1e-19169169MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037444.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640130.0KP164013.1 Pyrus pyrifolia clone PpTM8-1 TM8-like MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018500262.11e-112PREDICTED: MADS-box transcription factor 23-like
RefseqXP_018507109.11e-112PREDICTED: MADS-box transcription factor 23-like
TrEMBLA0A0D4ZYU71e-111A0A0D4ZYU7_PYRPY; TM8-like MADS-box protein
STRINGXP_009344275.11e-112(Pyrus x bretschneideri)
STRINGXP_009375197.11e-112(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.13e-46MIKC_MADS family protein