PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr037518.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Dof

Protein Properties

Length: 226aa MW: 24046.3 Da PI: 8.1022

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr037518.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127	5.8e-40	16	76	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+s+ntkfCyynny+lsqPr+fCk+C+ryWtkGGalrn+P+Ggg+rkn k+s Pbr037518.1 16 EQEQLKCPRCESSNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGALRNIPIGGGSRKNTKKS 76 57899****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	11	68	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-33	18	74	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.078	20	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	22	58	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MQDPATFQPM KPQFPEQEQL KCPRCESSNT KFCYYNNYNL SQPRHFCKNC KRYWTKGGAL 60 RNIPIGGGSR KNTKKSSSSA SKRSSSTSSS SLSSSSAAAA QNPDPQPDRT RAYGSKVDQD 120 SGVMDFSGSF SSLLTSNGQF GSLLEGLNPN GSGLKLMQMG DFGENLDAAG NVMNSDPGPG 180 LEGQSHGNPE SYMGLQNGDS STSSCWNGAN GWPDLAIYTP GSSFQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr037518.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009344438.1	1e-164	PREDICTED: dof zinc finger protein DOF3.1-like
Refseq	XP_009344445.1	1e-164	PREDICTED: dof zinc finger protein DOF3.1-like
Swissprot	O82155	2e-42	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A498H7I8	1e-161	A0A498H7I8_MALDO; Uncharacterized protein
STRING	XP_009344438.1	1e-164	(Pyrus x bretschneideri)
STRING	XP_009344445.1	1e-164	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6181	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	5e-37	DOF zinc finger protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]