PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037612.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HB-PHD
Protein Properties Length: 690aa    MW: 76997.7 Da    PI: 9.3918
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037612.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.19.7e-11457504653
                  S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
     Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                  ++ ++ ++ L ++F +n  ps++ +  L+k+lgL+ ++V+ WF+N R+
  Pbr037612.1 457 NIRSSDTQKLRQVFSENELPSRAVKDNLSKELGLNPEKVSKWFKNARY 504
                  56678899**************************************97 PP
2PHD35.81.8e-12233288151
                  SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
          PHD   1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                  +C+ C+ +++  +++++lCd +C+ +fH+kCl+++l++e++p+g   w+C+ C++k
  Pbr037612.1 233 FCAKCKLNEAfpDNDIILCDgTCNCAFHQKCLDPPLDTENIPRGeqGWFCKFCDCK 288
                  699999955455********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.2E-13225291IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.3E-11229288IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.175231288IPR019787Zinc finger, PHD-finger
PfamPF006289.3E-10233288IPR019787Zinc finger, PHD-finger
CDDcd155041.74E-30233285No hitNo description
SMARTSM002491.8E-7233286IPR001965Zinc finger, PHD-type
PROSITE patternPS013590234285IPR019786Zinc finger, PHD-type, conserved site
SMARTSM003891.8E-7455513IPR001356Homeobox domain
PfamPF000463.3E-8457504IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-10460503IPR009057Homeodomain-like
SuperFamilySSF466896.42E-9461517IPR009057Homeodomain-like
CDDcd000866.47E-8463504No hitNo description
PROSITE profilePS5007111.046466509IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MDTLVKNMRG SGKKSNLKES GKSGYSSSVA KLISSPSFKK GGKVPRVKKL KPKSSKTIIA  60
SALSKKRGAD SSSKASTSRN NDTNKKLMSR KEFHKVHDTD SSKKPSSVKL QDHKLSDNGS  120
GEKGEKRRRK KKPKKDKVEL DETSRLQRRT RYLLIKIKLE QNLIDAYAGE GWKGQSREKI  180
RPELELQRAN KQILNCKLGI RDAIQQLDSL SSVGSIADSF IAPDGSVSHE HIFCAKCKLN  240
EAFPDNDIIL CDGTCNCAFH QKCLDPPLDT ENIPRGEQGW FCKFCDCKME ILELVNAHLG  300
TCFPMNSGWQ DVFKEEATFP SGENSLLNPD EEWPSDDSED DDYKPERNVN SCSISRGGSD  360
DNVSEEELST DVSVGSDEST DGEIVSGHRQ RRSVDYKKLY DEMFGKDGPL LEQISDDEDW  420
GPVKRKRREK ESDAASTLMT LYESERNPDI DHTEAKNIRS SDTQKLRQVF SENELPSRAV  480
KDNLSKELGL NPEKVSKWFK NARYLSLKTR KEVSGKDHQT FTPGISKEPG YENVTGKAAD  540
LMASDSDDDT LAETVVHSPK NVNAAFRRKH PKSLSSPLRK SQQKAPSCGS PSKSNKDGKE  600
SSDDVSLKKL MNTRTKEKRA NLIAGGGGDG CRAAELEMER LCKAKGRLEH MRQKLLKLQN  660
VKAKQKSNKS LLHEHTVIYV PVAQLQEKV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132EKRRRKKKP
2125131KRRRKKK
3126134RRRKKKPKK
4127132RRKKKP
5128135RKKKPKKD
6424429RKRREK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037612.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359932.10.0PREDICTED: pathogenesis-related homeodomain protein
SwissprotP487851e-149PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A498HMK80.0A0A498HMK8_MALDO; Uncharacterized protein
STRINGXP_009359932.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-148pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]