PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037618.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 244aa    MW: 27763.7 Da    PI: 5.0034
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037618.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.5e-135597754
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                   Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  Pbr037618.1 55 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 97
                 57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.3044897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.68E-1351102No hitNo description
SuperFamilySSF474591.7E-1751112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1654112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-1554103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-115597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDNIGDEYKH YWETNMFLQT EELDSSWGLD EAFSGYYDSS SPDGAASFMA SKNIVSERNR  60
RKKLNERLFA LRAVVPNISK MDKASIIKDA IDYIQELHEQ ERRIQTEIVE LESGKSNKKL  120
GSDFEQDLPV LLRSKKKKIE QLYDCGESRI STIEILELRV TYMGEKTLVV SLTCSKRMDT  180
MVKLCEVFES LKLKIITANI TAFSGRVSKT VFVEADEEEK DHLKIKIETA IAALNDPQSP  240
MSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-145397953Transcription factor MYC2
5gnj_B7e-145397953Transcription factor MYC2
5gnj_E7e-145397953Transcription factor MYC2
5gnj_F7e-145397953Transcription factor MYC2
5gnj_G7e-145397953Transcription factor MYC2
5gnj_I7e-145397953Transcription factor MYC2
5gnj_M7e-145397953Transcription factor MYC2
5gnj_N7e-145397953Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037618.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359948.11e-177PREDICTED: transcription factor bHLH35
SwissprotQ2HIV92e-98BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A498HMJ91e-166A0A498HMJ9_MALDO; Uncharacterized protein
STRINGXP_009359948.11e-177(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-100bHLH family protein