PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037828.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 278aa    MW: 30230.6 Da    PI: 4.7206
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037828.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-184190255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++ GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++ +++++g
  Pbr037828.1 41 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRSARSMRG 90
                 678******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.09E-304097No hitNo description
SMARTSM003802.8E-3341104IPR001471AP2/ERF domain
PROSITE profilePS5103220.2974198IPR001471AP2/ERF domain
PRINTSPR003673.5E-84253IPR001471AP2/ERF domain
PfamPF008478.6E-114290IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-204299IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-284298IPR001471AP2/ERF domain
PRINTSPR003673.5E-86480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDFFTNSPSK SNNSPPSSTK TKRKQQQQQT QQPQQTQQET RFLGVRRRPW GRYAAEIRDP  60
STKERHWLGT FDTAEEAALA YDRSARSMRG SKARTNFVYS DMPHGSSVTS IISPEEDVSA  120
FFTTSLPQTH AQSQTHTQQS FTHQDPFDAY SFSGSSSAEN ESGSYVPAFG VVADESGSQS  180
QSHTHELPPL PACVSSSTCY GPEGGIMSFD GVGNESGFYE FSDPTTNNGL DSLVSGSYVG  240
FDSNEFVQHS PLFGSMPTVS EAGIDGFDLG SSSAYFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-204297359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037828.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359853.10.0PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A498HP731e-156A0A498HP73_MALDO; Uncharacterized protein
STRINGXP_009359853.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.14e-44ERF family protein