PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr037954.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Nin-like

Protein Properties

Length: 256aa MW: 29278.9 Da PI: 10.0352

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr037954.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86	3.4e-27	128	177	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i l+dl+kyF+lpi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl Pbr037954.1 128 ANIALSDLAKYFDLPIVEASRNLNVGLTVLKKKCREFGIPRWPHRKIKSL 177 79**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.406	112	197	IPR003035	RWP-RK domain
Pfam	PF02042	3.6E-22	129	177	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MDSCDCDCDP HLLRSLLVFK NTINHELIRS LHVYGLDEGK RNEVEREFVF GENGLYAELP 60 AEPLLRLMKF PASQVLQGHV NGCWACILAF HENSPPDFTC IPSILSVSRC KVAGITEKKK 120 RAPSGRIANI ALSDLAKYFD LPIVEASRNL NVGLTVLKKK CREFGIPRWP HRKIKSLDSL 180 IRDLQEETEI QQKENKAAAL AVLKRQRMLE RARESIERRP FLEMKTETKR FRQDVFKRRH 240 RARALRSQGL STSSN*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr037954.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021603606.1	1e-102	protein RKD5 isoform X2
Swissprot	O81791	2e-53	RKD5_ARATH; Protein RKD5
TrEMBL	A0A314YJ69	1e-129	A0A314YJ69_PRUYE; Protein RKD5
STRING	XP_009344678.1	2e-92	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	7e-56	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]