PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038091.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 256aa    MW: 28697.6 Da    PI: 9.0692
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038091.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033102124223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +C+ C+++++++ +L  H +  H
  Pbr038091.1 102 SCSVCSRVYPTSRLLSIHVSEaH 124
                  6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.657499IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807699IPR007087Zinc finger, C2H2
SMARTSM003555.4101124IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280103124IPR007087Zinc finger, C2H2
SMARTSM003550.11139164IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280141164IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MASMDVEEAR PVFPHWKPLR RRFAPESPFF ASGNIERELL AKQIALDLTE DEKHQLREMV  60
DEQGSACFAF AGGVFCPIVG CGARLSSLED FEDHYNARHT ASCSVCSRVY PTSRLLSIHV  120
SEAHDSFFQA KVARGYLMYD CLVEGCGLKF KNYKSRQQHL VDKHKFPTSF EFFKQALPSE  180
KQRQKKNQRR QVVPKKADSS STLVDNETMD GLVSAVSKLS TSDSTPSAIS FGRRPTRGVA  240
FVPRAVQREK KPDSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038091.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344921.10.0PREDICTED: zinc finger protein 511
RefseqXP_018500404.10.0PREDICTED: zinc finger protein 511
TrEMBLA0A498HL221e-163A0A498HL22_MALDO; Uncharacterized protein
STRINGXP_009344921.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-107zinc ion binding;nucleic acid binding;zinc ion binding