PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038266.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 173aa    MW: 19931.8 Da    PI: 9.7618
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038266.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.44.4e-171769456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 + ++t++q++ Le+ F+ n+++  e++  LAk+l ++ rqV +W+qN+Ra++k
  Pbr038266.1 17 KKRLTQDQVKLLERSFAFNKKLEPERKLLLAKQLAIPPRQVAIWYQNKRARWK 69
                 5679************************************************9 PP
2HD-ZIP_I/II104.67.7e-3416107293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +k+rl+++qvklLE+sF  ++kLeperK  la++L + prqva+W+qn+RAR+kt+ lE +y+a+++++++  +e++rLek+ve+Lr elk+
  Pbr038266.1  16 NKKRLTQDQVKLLERSFAFNKKLEPERKLLLAKQLAIPPRQVAIWYQNKRARWKTQSLELNYNAIQAKLESALAEKRRLEKDVERLRGELKR 107
                  79*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6771171IPR001356Homeobox domain
SMARTSM003896.9E-131475IPR001356Homeobox domain
CDDcd000861.01E-121772No hitNo description
PfamPF000462.5E-141769IPR001356Homeobox domain
SuperFamilySSF466893.12E-161779IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-171778IPR009057Homeodomain-like
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDFFQTSNHK NQFQHNKKRL TQDQVKLLER SFAFNKKLEP ERKLLLAKQL AIPPRQVAIW  60
YQNKRARWKT QSLELNYNAI QAKLESALAE KRRLEKDVER LRGELKRAHE VVFALNQQAQ  120
VFPPNPVICS VFESSNCSDE GGVGSSSMQV QPHGDHEVKQ LEELYACLIG MQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038266.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340580.11e-126PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A498IMF71e-115A0A498IMF7_MALDO; Uncharacterized protein
STRINGXP_009340580.11e-125(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.13e-37homeobox protein 52