PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038297.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 490aa    MW: 56187.2 Da    PI: 9.8996
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038297.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.16.8e-18231041199
                  HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++++ l++p kf+++++g + +  + +l+ ++g + +v+l  ++++++ ++ +GW+ Fvk+++L+ gDf+vFk+dg+s+f  +v ++++
  Pbr038297.1  23 FSRH-LRIPPKFVKNFNGRSLC--KCVLRGPNGLRRTVEL--EGRKNGLFFDDGWQYFVKDHHLEKGDFLVFKYDGKSKF--KVAIYDT 104
                  4555.9*******988888555..8***************..*********************************99999..8888775 PP
2B346.46.9e-152243011799
                  E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++p  f++++ +g +    +  l+ +sg + +v+l  + + ++ ++++GW++Fvk+++L++ D++vF +dg+++f   vk++++
  Pbr038297.1 224 RIPPAFIRKNfNGRS--LCKCDLKGPSGIRRTVEL--EERENGLFFRNGWQGFVKDHRLEAADVLVFDYDGETKF--DVKIYDR 301
                  69********75554..4489**************..********************************998888..9999987 PP
3B350.53.9e-16379468799
                  .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++ +l ++ +++pk+ a +hg+   ++ t+tl+d+ grsW ++l++r+  ++    +++GW + vkan++  gD+++F++++  ++ ++v++frk
  Pbr038297.1 379 NKKHLLRC-VRIPKQLAVDHGLM--SKNTVTLQDPAGRSWVIQLRIRRVTSShqLDMSTGWVHCVKANRISPGDTMIFEFVK--QGLMKVHIFRK 468
                  55555555.9**********888..4559***************99444444248888*********************765..7779****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-219107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-2010107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.15312105IPR003340B3 DNA binding domain
CDDcd100178.94E-1714103No hitNo description
SMARTSM010195.3E-1415105IPR003340B3 DNA binding domain
PfamPF023622.4E-1523103IPR003340B3 DNA binding domain
SMARTSM010193.5E-9211302IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-16221304IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-17223304IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-13224300No hitNo description
PfamPF023625.1E-13224301IPR003340B3 DNA binding domain
PROSITE profilePS5086310.602244302IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-18368468IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-18369468IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-11374469IPR003340B3 DNA binding domain
CDDcd100171.20E-12384467No hitNo description
PfamPF023624.4E-14384468IPR003340B3 DNA binding domain
PROSITE profilePS5086312.59389469IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MARKLVKHSQ KKQSFYTILL GDFSRHLRIP PKFVKNFNGR SLCKCVLRGP NGLRRTVELE  60
GRKNGLFFDD GWQYFVKDHH LEKGDFLVFK YDGKSKFKVA IYDTTACEKD VEIADSWRIG  120
SSIPLFNIGQ ARVKEEINEL QTDNYNENCE NKVFNSGRRK CNHVISGKRP AHDDREATST  180
ESVVFNDRIK STPQILAVSF MEFIAFNAFL SVTNCLASWE PFSRIPPAFI RKNFNGRSLC  240
KCDLKGPSGI RRTVELEERE NGLFFRNGWQ GFVKDHRLEA ADVLVFDYDG ETKFDVKIYD  300
RSACEKDVGA AVRNTQNQAR VKDEIGDLDT ENYNEERKIR PTGRSNYFIS RKRHYHLEDT  360
ETGSILLKLE NQCFLAFSNK KHLLRCVRIP KQLAVDHGLM SKNTVTLQDP AGRSWVIQLR  420
IRRVTSSHQL DMSTGWVHCV KANRISPGDT MIFEFVKQGL MKVHIFRKGA VRGDKCRLVL  480
AGPNVKAES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038297.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5459811e-31AB545981.1 Pyrus pyrifolia genes for F-box proteins, S ribonuclease, complete cds, haplotype: S4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340814.10.0PREDICTED: B3 domain-containing protein REM10-like
TrEMBLA0A498IIZ10.0A0A498IIZ1_MALDO; Uncharacterized protein
STRINGXP_009340814.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.14e-16B3 family protein