PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038298.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 91aa    MW: 10318.9 Da    PI: 10.3956
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038298.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.61.1e-135693599
                 EEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3 35 tltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                  +tl+d++grsW v+l+    ++s+   l++GW+e  kan++  gD++vF+++++s     v++frk
  Pbr038298.1  5 SVTLQDPDGRSWFVRLRTlyAGRSDYLNLSTGWRECGKANQISLGDTIVFEFVKQSVI--QVHIFRK 69
                 59**************766588888899***********************9875555..9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.944170IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-13469IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-15570IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-11569IPR003340B3 DNA binding domain
CDDcd100171.31E-11568No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MDKDSVTLQD PDGRSWFVRL RTLYAGRSDY LNLSTGWREC GKANQISLGD TIVFEFVKQS  60
VIQVHIFRKG EVRGNVCRLV LVAPYGKKKR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038298.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008366489.29e-55B3 domain-containing protein LOC_Os12g40080-like isoform X1
RefseqXP_008366490.28e-55putative B3 domain-containing protein At5g66980 isoform X2
RefseqXP_028944861.14e-55putative B3 domain-containing protein Os03g0621600 isoform X3
TrEMBLA0A498IJ592e-53A0A498IJ59_MALDO; Uncharacterized protein
STRINGXP_009340826.14e-59(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-07B3 family protein